Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I09
         (445 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC010866-1|AAH10866.1|  219|Homo sapiens TRAPPC4 protein protein.      63   4e-10
AF151862-1|AAD34099.1|  219|Homo sapiens CGI-104 protein protein.      63   4e-10
AF105025-1|AAF21897.1|  219|Homo sapiens unknown protein.              63   4e-10
AL591042-1|CAI14457.1|  847|Homo sapiens vav 3 oncogene protein.       29   7.2  
AL513206-1|CAH73195.1|  847|Homo sapiens vav 3 oncogene protein.       29   7.2  
AL391235-1|CAH72458.1|  847|Homo sapiens vav 3 oncogene protein.       29   7.2  
AL353892-1|CAI21786.1|  847|Homo sapiens vav 3 oncogene protein.       29   7.2  
AF118887-1|AAD20349.1|  847|Homo sapiens VAV-3 protein protein.        29   7.2  
AF067817-1|AAC79695.1|  847|Homo sapiens VAV-3 protein protein.        29   7.2  

>BC010866-1|AAH10866.1|  219|Homo sapiens TRAPPC4 protein protein.
          Length = 219

 Score = 63.3 bits (147), Expect = 4e-10
 Identities = 31/68 (45%), Positives = 44/68 (64%)
 Frame = +2

Query: 242 FGQQRWN*RGQCVAYCKWIPVNGKTTDDGREVFDILEIKENYPLNLKFGRARATTNEKIV 421
           FGQ+     G  V     + VNG+ T DG+EV + L    NYP++++FGR R T+NEK++
Sbjct: 51  FGQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLM 110

Query: 422 LASMFYPL 445
           LASMF+ L
Sbjct: 111 LASMFHSL 118


>AF151862-1|AAD34099.1|  219|Homo sapiens CGI-104 protein protein.
          Length = 219

 Score = 63.3 bits (147), Expect = 4e-10
 Identities = 31/68 (45%), Positives = 44/68 (64%)
 Frame = +2

Query: 242 FGQQRWN*RGQCVAYCKWIPVNGKTTDDGREVFDILEIKENYPLNLKFGRARATTNEKIV 421
           FGQ+     G  V     + VNG+ T DG+EV + L    NYP++++FGR R T+NEK++
Sbjct: 51  FGQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLM 110

Query: 422 LASMFYPL 445
           LASMF+ L
Sbjct: 111 LASMFHSL 118


>AF105025-1|AAF21897.1|  219|Homo sapiens unknown protein.
          Length = 219

 Score = 63.3 bits (147), Expect = 4e-10
 Identities = 31/68 (45%), Positives = 44/68 (64%)
 Frame = +2

Query: 242 FGQQRWN*RGQCVAYCKWIPVNGKTTDDGREVFDILEIKENYPLNLKFGRARATTNEKIV 421
           FGQ+     G  V     + VNG+ T DG+EV + L    NYP++++FGR R T+NEK++
Sbjct: 51  FGQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLM 110

Query: 422 LASMFYPL 445
           LASMF+ L
Sbjct: 111 LASMFHSL 118


>AL591042-1|CAI14457.1|  847|Homo sapiens vav 3 oncogene protein.
          Length = 847

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 257 WN*RGQCVAYCKWIPVNGKTTDDGREVFDILE 352
           W    Q + +CK +P N + T D  +VFD+ +
Sbjct: 4   WKQCAQWLIHCKVLPTNHRVTWDSAQVFDLAQ 35


>AL513206-1|CAH73195.1|  847|Homo sapiens vav 3 oncogene protein.
          Length = 847

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 257 WN*RGQCVAYCKWIPVNGKTTDDGREVFDILE 352
           W    Q + +CK +P N + T D  +VFD+ +
Sbjct: 4   WKQCAQWLIHCKVLPTNHRVTWDSAQVFDLAQ 35


>AL391235-1|CAH72458.1|  847|Homo sapiens vav 3 oncogene protein.
          Length = 847

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 257 WN*RGQCVAYCKWIPVNGKTTDDGREVFDILE 352
           W    Q + +CK +P N + T D  +VFD+ +
Sbjct: 4   WKQCAQWLIHCKVLPTNHRVTWDSAQVFDLAQ 35


>AL353892-1|CAI21786.1|  847|Homo sapiens vav 3 oncogene protein.
          Length = 847

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 257 WN*RGQCVAYCKWIPVNGKTTDDGREVFDILE 352
           W    Q + +CK +P N + T D  +VFD+ +
Sbjct: 4   WKQCAQWLIHCKVLPTNHRVTWDSAQVFDLAQ 35


>AF118887-1|AAD20349.1|  847|Homo sapiens VAV-3 protein protein.
          Length = 847

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 257 WN*RGQCVAYCKWIPVNGKTTDDGREVFDILE 352
           W    Q + +CK +P N + T D  +VFD+ +
Sbjct: 4   WKQCAQWLIHCKVLPTNHRVTWDSAQVFDLAQ 35


>AF067817-1|AAC79695.1|  847|Homo sapiens VAV-3 protein protein.
          Length = 847

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 257 WN*RGQCVAYCKWIPVNGKTTDDGREVFDILE 352
           W    Q + +CK +P N + T D  +VFD+ +
Sbjct: 4   WKQCAQWLIHCKVLPTNHRVTWDSAQVFDLAQ 35


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,211,473
Number of Sequences: 237096
Number of extensions: 1339835
Number of successful extensions: 5374
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5371
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3659526016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)