Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I09
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical pr...    40   6e-04
Z81070-12|CAB03008.1|  495|Caenorhabditis elegans Hypothetical p...    30   0.87 
Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z75544-6|CAA99882.1|  495|Caenorhabditis elegans Hypothetical pr...    30   0.87 
AF174643-1|AAD51977.1|  495|Caenorhabditis elegans PP2A-B regula...    30   0.87 
L10990-4|ABB88238.1|  438|Caenorhabditis elegans Hypothetical pr...    28   2.7  
L10990-3|ABB88237.1|  505|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    28   3.5  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      28   3.5  
AF038623-6|AAB94154.1|  388|Caenorhabditis elegans Hypothetical ...    27   4.6  
U00040-2|AAA50667.4|  366|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AL031627-10|CAA20949.1|  301|Caenorhabditis elegans Hypothetical...    27   6.1  

>U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical
           protein F36D4.2 protein.
          Length = 224

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 16/37 (43%), Positives = 27/37 (72%)
 Frame = +2

Query: 335 VFDILEIKENYPLNLKFGRARATTNEKIVLASMFYPL 445
           V + L+ +++YP+ +KF     +TNEKI+L+SMF+ L
Sbjct: 87  VLEYLQEEDHYPVTVKFAAPTVSTNEKIILSSMFHSL 123


>Z81070-12|CAB03008.1|  495|Caenorhabditis elegans Hypothetical
           protein F26E4.1 protein.
          Length = 495

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -3

Query: 293 IYSKQHIAHVNSISVDQNETTIFLFS*CIDVK*YPI-FSVSTFGMFDS**YIKPRTYYDI 117
           +Y   H  HVNSISV+ ++ T FL +  + V  + +  +  +F + D    IKP    ++
Sbjct: 211 VYGNAHTYHVNSISVNSDQET-FLSADDLRVNLWNLEITNESFNIVD----IKPANMEEL 265

Query: 116 TPYITIVE 93
           T  IT  E
Sbjct: 266 TEVITAAE 273


>Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical
           protein D2005.5 protein.
          Length = 1119

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +2

Query: 68  NLTFYVNLIQLWLYTELYRSKSGV*YIIMNQTFRKWKLKKSGI 196
           N   YV+   + ++ E++++     Y+++NQ  ++WK +K  I
Sbjct: 491 NERLYVSDFSMMIFDEVHKAAKNHPYVLINQMVQEWKYEKPQI 533


>Z75544-6|CAA99882.1|  495|Caenorhabditis elegans Hypothetical
           protein F26E4.1 protein.
          Length = 495

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -3

Query: 293 IYSKQHIAHVNSISVDQNETTIFLFS*CIDVK*YPI-FSVSTFGMFDS**YIKPRTYYDI 117
           +Y   H  HVNSISV+ ++ T FL +  + V  + +  +  +F + D    IKP    ++
Sbjct: 211 VYGNAHTYHVNSISVNSDQET-FLSADDLRVNLWNLEITNESFNIVD----IKPANMEEL 265

Query: 116 TPYITIVE 93
           T  IT  E
Sbjct: 266 TEVITAAE 273


>AF174643-1|AAD51977.1|  495|Caenorhabditis elegans PP2A-B
           regulatory subunit PR55/B protein.
          Length = 495

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -3

Query: 293 IYSKQHIAHVNSISVDQNETTIFLFS*CIDVK*YPI-FSVSTFGMFDS**YIKPRTYYDI 117
           +Y   H  HVNSISV+ ++ T FL +  + V  + +  +  +F + D    IKP    ++
Sbjct: 211 VYGNAHTYHVNSISVNSDQET-FLSADDLRVNLWNLEITNESFNIVD----IKPANMEEL 265

Query: 116 TPYITIVE 93
           T  IT  E
Sbjct: 266 TEVITAAE 273


>L10990-4|ABB88238.1|  438|Caenorhabditis elegans Hypothetical
           protein C30A5.10b protein.
          Length = 438

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = -1

Query: 286 VSNTLPTLIPSLLTKMKRLFFYFHDVLMSSDTRFFQFPLS 167
           ++N LPT+ P ++++ +     + D+ ++    F  FP++
Sbjct: 29  INNALPTIDPQMISQAQAAINPYTDIFVNPPNSFVDFPMA 68


>L10990-3|ABB88237.1|  505|Caenorhabditis elegans Hypothetical
           protein C30A5.10a protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = -1

Query: 286 VSNTLPTLIPSLLTKMKRLFFYFHDVLMSSDTRFFQFPLS 167
           ++N LPT+ P ++++ +     + D+ ++    F  FP++
Sbjct: 29  INNALPTIDPQMISQAQAAINPYTDIFVNPPNSFVDFPMA 68


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -1

Query: 268 TLIPSLLTKMKRLFFYFHDVLMSSDTRFFQFPLSECLI 155
           T IP+L++ +++L+   +D++     +   FPL  CL+
Sbjct: 317 TNIPALISLVQKLYTTTNDMISKKQHKLAAFPLITCLL 354


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -1

Query: 268 TLIPSLLTKMKRLFFYFHDVLMSSDTRFFQFPLSECLI 155
           T IP+L++ +++L+   +D++     +   FPL  CL+
Sbjct: 317 TNIPALISLVQKLYTTTNDMISKKQHKLAAFPLITCLL 354


>AF038623-6|AAB94154.1|  388|Caenorhabditis elegans Hypothetical
           protein T08B6.2 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 86  LHKMLSLFSINQYILASADLQPGD 15
           L K+L+LF I Q+IL +   +PGD
Sbjct: 46  LKKILNLFQILQFILENIHCKPGD 69


>U00040-2|AAA50667.4|  366|Caenorhabditis elegans Hypothetical
           protein C18H2.2 protein.
          Length = 366

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 93  FNYGYIRSYIVVSPGFNIL 149
           F  GY RSYI + P F IL
Sbjct: 295 FEAGYDRSYITIKPDFGIL 313


>AL031627-10|CAA20949.1|  301|Caenorhabditis elegans Hypothetical
           protein Y102A5C.19 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +2

Query: 296 IPVNGKTTDDGREVFDILEIKENYPLNLKFGRARATTNEKIVLASMFYP 442
           I V   TTDD  E+ DIL IK    L L+ G  R+     + + S+F P
Sbjct: 222 INVKDLTTDDALEIRDIL-IKS---LTLESGYFRSVIANSVAIPSVFEP 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,266,383
Number of Sequences: 27780
Number of extensions: 211926
Number of successful extensions: 435
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)