Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I07
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208...    29   2.0  
08_01_0484 - 4251270-4251380,4251455-4251590,4251648-4251775,425...    27   6.0  
02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411     27   6.0  
05_04_0413 - 21063868-21064344,21064416-21064482,21064865-210649...    27   7.9  

>02_01_0312 -
           2082614-2082677,2082815-2082945,2083041-2083129,
           2083223-2083292,2083429-2083509,2083768-2083821,
           2084864-2085067,2086272-2086366,2086976-2086997,
           2087492-2087585,2087677-2087764,2087874-2087979,
           2088103-2088189,2088261-2088309,2088418-2088521,
           2088605-2088697,2088900-2088974,2089316-2089384,
           2090182-2090250,2090339-2090374,2090471-2090565,
           2090836-2090911,2091067-2091153,2091287-2091355,
           2091654-2091731,2091836-2091925,2092436-2092642,
           2092736-2092879
          Length = 841

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 348 ALPPCCDYLVFLYQKLRSILESDRWGLN 265
           AL P  DY+ ++YQ++  + E +R+ +N
Sbjct: 257 ALSPYLDYIAYIYQRMDPLPEQERFEIN 284


>08_01_0484 -
           4251270-4251380,4251455-4251590,4251648-4251775,
           4252137-4252139
          Length = 125

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 258 GLTWNPDVLATAPSSLHCLLCQELT 184
           G    P  LATA SS+HCL  +E T
Sbjct: 79  GFPVTPMFLATAASSVHCLCTREST 103


>02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411
          Length = 229

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = -3

Query: 315 LYQKLR-SILESDRWG----LNLCGLTWNPDVLATAPSSLHCLLCQELTSGKL*PLL 160
           +Y+ +R S+L    WG    L    LTW+PDV A+    +  LL +  T G+  P L
Sbjct: 149 IYEVVRTSVLSCAWWGCWESLPFVDLTWSPDVAASDVDVI--LLRRSATDGRYAPFL 203


>05_04_0413 -
           21063868-21064344,21064416-21064482,21064865-21064948,
           21065028-21065158,21065504-21065560,21065818-21065866,
           21067357-21067442,21067715-21067792,21067952-21068074,
           21068705-21068794,21068796-21068849,21068923-21069020,
           21069093-21069160,21069688-21069777,21069870-21070117
          Length = 599

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 237 VLATAPSSLHCLLCQELTSGKL 172
           VLATAP+  H    Q LT+GKL
Sbjct: 397 VLATAPNGGHLAFFQGLTAGKL 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,695,289
Number of Sequences: 37544
Number of extensions: 207411
Number of successful extensions: 380
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)