Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I07
         (479 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC133019-1|AAI33020.1| 1427|Homo sapiens CCDC144A protein protein.     31   2.1  
AK125484-1|BAC86178.1|  148|Homo sapiens protein ( Homo sapiens ...    30   3.7  

>BC133019-1|AAI33020.1| 1427|Homo sapiens CCDC144A protein protein.
          Length = 1427

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -3

Query: 348  ALPPCCDYLVFLYQKLRSILESDRWGLNLCGLTWNPDVLATAPSSLHCLLC 196
            AL     YL+ + QKL++ L ++  G +  GL   P   + + SSLH LLC
Sbjct: 1356 ALKDMESYLLKMQQKLQNDLTAEVAGSSQTGLHRIPQCSSFSSSSLHLLLC 1406


>AK125484-1|BAC86178.1|  148|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43495 fis, clone PEBLM2000338. ).
          Length = 148

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 90  IYTLLITYVVEVCKYIYILMLFIEVMVIVCLKLI 191
           IY  +  YV  +  Y+Y+ +++I V V VC+  I
Sbjct: 17  IYIHVFVYVCYIYLYVYVCVIYIHVCVCVCVLYI 50


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,566,928
Number of Sequences: 237096
Number of extensions: 1236512
Number of successful extensions: 1841
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1841
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4270724850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)