Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_I05
(342 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 118 3e-28
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 1.1
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 3.2
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 25 3.2
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 4.3
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 25 4.3
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 24 5.6
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 24 7.5
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 24 7.5
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 23 9.8
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 23 9.8
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb... 23 9.8
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 23 9.8
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c... 23 9.8
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 23 9.8
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 118 bits (283), Expect = 3e-28
Identities = 53/109 (48%), Positives = 72/109 (66%)
Frame = +2
Query: 14 VGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALS 193
VG SEATLLNMLNISPF+YG+ V +YD G +F+P ILD+ EDL L+ + + A+S
Sbjct: 165 VGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAIS 224
Query: 194 LSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFKEATTIKEYIKDPSKF 340
L YPT+ S HS+ N +KNL+A++ TE F+ K ++ DPS F
Sbjct: 225 LGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF 273
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 1.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 90 TCLTTRPYEKGEMFNMLRRVASEAP 16
+ LT PYEKGE N +R S P
Sbjct: 279 SALTRLPYEKGEFINFVRYHPSITP 303
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 3.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 158 FLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIA 271
+L GV +A + PT S PH + GF + IA
Sbjct: 524 YLVGVPLQSATICVVSLPTEDSQPHVLHEGFLGEVCIA 561
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 3.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 94 VHLFDNKTIRKGRDVQHVEK 35
V L D +RKG DVQ +EK
Sbjct: 289 VLLSDTAGLRKGEDVQEIEK 308
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 4.3
Identities = 14/61 (22%), Positives = 32/61 (52%)
Frame = +2
Query: 47 LNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASA 226
L+I F+ G+ + + +G++ +P P + F+A A+ +++S YP ++ +
Sbjct: 186 LDIREFNTGMHIINLLLNGSLKSP------PVSISPSFIASAASTSSVSAPSQYPGLSRS 239
Query: 227 P 229
P
Sbjct: 240 P 240
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 24.6 bits (51), Expect = 4.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 94 VHLFDNKTIRKGRDVQHVEKSSFRSS 17
VH D T+R G + SSFR S
Sbjct: 62 VHCLDIPTVRPGSSMSRTSASSFRYS 87
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 24.2 bits (50), Expect = 5.6
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 4/22 (18%)
Frame = +2
Query: 284 VDFKEATT----IKEYIKDPSK 337
VD +EA T +KEYI+DP+K
Sbjct: 427 VDGREAVTFLRLVKEYIEDPAK 448
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 23.8 bits (49), Expect = 7.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 172 HSSKELLAKVLRLDVENCR 116
H +E+ K+L LD +NC+
Sbjct: 60 HGQQEIHNKILDLDFQNCK 78
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 23.8 bits (49), Expect = 7.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 175 QRGRALVVHRVPDGRVCASFHRERFQ 252
+RG++LVV + +GR CA +FQ
Sbjct: 2068 RRGQSLVVWGIQEGRQCAREIDLKFQ 2093
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 23.4 bits (48), Expect = 9.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 230 HSIANGFKNLLAIAAVTEVDFKEATTIKEYIKDPSKF 340
HS+A F + L I+ ++ V+ K Y+ KF
Sbjct: 487 HSLAQQFPSALGISFISVVEGMRKRLAKSYVYPEIKF 523
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 327 SLMYSLMVVASLKSTSVTAAMAS 259
+L YSL +V S+ TSV+ M++
Sbjct: 109 NLGYSLPIVGSISETSVSGIMST 131
>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 23.4 bits (48), Expect = 9.8
Identities = 17/74 (22%), Positives = 29/74 (39%)
Frame = +2
Query: 116 PAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFK 295
P + + P +K V +A + +G P IA +LAI + + K
Sbjct: 117 PGRITVPPVIFYDKSTRQVYAIAHVGKDVGLDDDTIHPGLIATCMDEVLAICSFLSLPNK 176
Query: 296 EATTIKEYIKDPSK 337
A T + +P+K
Sbjct: 177 IAVTANLKLSNPTK 190
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 53 ISPFSYGLVVKQVYDSGTIFAPAILDIKPED 145
+SPFS + + +YD T P+ L+I ++
Sbjct: 38 VSPFSDRIQLNYLYDGKTFSDPSNLNIHQQE 68
>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 23.4 bits (48), Expect = 9.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 297 SLKSTSVTAAMASRFLKPFAME*GADATVGYPMDNESAATLAT 169
S KS AA A++ LK + A +G+P D A LAT
Sbjct: 88 SEKSVRSAAAEAAKILKSNGAKSIAVDGMGFPKDAALGAALAT 130
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 23.4 bits (48), Expect = 9.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 130 VENCRREDGTGVVHLFDNKTIRKGRDVQHVEKSS 29
+ENC ++ T VV LF+ +R+ ++ + SS
Sbjct: 585 LENCHLQNQTSVVVLFELLRLRQLKEPSLLSSSS 618
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,306,661
Number of Sequences: 5004
Number of extensions: 22539
Number of successful extensions: 84
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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