Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_I05
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 145 9e-36
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 145 9e-36
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 144 2e-35
03_02_0966 + 12783515-12783901 30 0.41
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 30 0.55
02_03_0041 + 14275897-14276370 29 0.95
03_02_0394 - 8081172-8081330,8082015-8082134,8082223-8082271,808... 29 1.3
01_06_1676 - 39084928-39085016,39085462-39085555,39085664-390857... 29 1.3
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 28 1.7
04_04_0095 - 22775340-22776017 28 1.7
04_01_0142 + 1640472-1640611,1641618-1641744,1642233-1642425,164... 28 2.2
03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600 28 2.2
03_01_0610 + 4478521-4478715,4480003-4480090,4480255-4480321,448... 27 2.9
06_01_1023 - 7996240-7996369,7997166-7997260,7997430-7997515,799... 27 3.9
05_05_0036 - 21758409-21758531,21758891-21759206,21759964-217611... 27 5.1
05_03_0155 - 9002049-9002134,9002825-9004139 27 5.1
02_02_0528 + 11199799-11200470,11201850-11201951,11202858-112034... 27 5.1
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 27 5.1
10_06_0088 - 10538037-10539463,10539696-10539789 26 6.7
04_04_0969 - 29787617-29787919,29788019-29788180,29788962-297890... 26 6.7
03_02_0052 + 5285061-5285106,5285711-5285754,5286317-5286539,528... 26 6.7
08_01_0799 + 7734031-7735102,7735453-7735475 26 8.9
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 26 8.9
04_04_0475 + 25500470-25500609,25500697-25500794,25502806-255029... 26 8.9
03_05_0291 - 22837412-22838128 26 8.9
03_02_0265 + 6974432-6974665 26 8.9
01_06_1474 + 37630471-37631736,37631965-37632028,37632928-37633124 26 8.9
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 145 bits (351), Expect = 9e-36
Identities = 65/111 (58%), Positives = 85/111 (76%)
Frame = +2
Query: 8 DNVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAA 187
D VG+SE+ LL L I PFSYGLV+ VYDSG++F+P +LD+ EDL EKF +GV+ VA+
Sbjct: 168 DKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVAS 227
Query: 188 LSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFKEATTIKEYIKDPSKF 340
+SL+I YPT+A+APH NG+KN+LA+A TE + A IKEY+KDPSKF
Sbjct: 228 VSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKF 278
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 145 bits (351), Expect = 9e-36
Identities = 65/111 (58%), Positives = 85/111 (76%)
Frame = +2
Query: 8 DNVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAA 187
D VG+SE+ LL L I PFSYGLV+ VYDSG++F+P +LD+ EDL EKF +GV+ VA+
Sbjct: 168 DKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVAS 227
Query: 188 LSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFKEATTIKEYIKDPSKF 340
+SL+I YPT+A+APH NG+KN+LA+A TE + A IKEY+KDPSKF
Sbjct: 228 VSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKF 278
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 144 bits (348), Expect = 2e-35
Identities = 64/111 (57%), Positives = 85/111 (76%)
Frame = +2
Query: 8 DNVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAA 187
D VG+SE+ LL L I PFSYGLV+ VYDSG++F+P +LD+ +DL EKF +GV+ VA+
Sbjct: 168 DKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVAS 227
Query: 188 LSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFKEATTIKEYIKDPSKF 340
+SL+I YPT+A+APH NG+KN+LA+A TE + A IKEY+KDPSKF
Sbjct: 228 VSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKF 278
>03_02_0966 + 12783515-12783901
Length = 128
Score = 30.3 bits (65), Expect = 0.41
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +2
Query: 164 AGVANVAALSLSIGYPTVASAPHSIANGFKN-LLAIAA 274
AG+A VAA++ ++ P VA A +++ KN LL+IA+
Sbjct: 67 AGIAAVAAVAAALAVPEVAEAAPALSPSLKNFLLSIAS 104
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 29.9 bits (64), Expect = 0.55
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +2
Query: 137 PEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFKEATTIKE 316
PE R F AG A V A +P A+A +S GF+ +A +V F E T +
Sbjct: 35 PEKKRASFAAGAAAVRAKVCDARWPASAAAANSAPYGFRGGVATRSVA---FDEMTPRRA 91
Query: 317 YIKDPS 334
+ P+
Sbjct: 92 SVDVPN 97
>02_03_0041 + 14275897-14276370
Length = 157
Score = 29.1 bits (62), Expect = 0.95
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 225 ADATVGYPMDNESAATLATPARNFSRRSSGLMSRIAGAKMVPE 97
A+ G P+ E AT A RR+SG + +AG +PE
Sbjct: 88 AEEEDGVPVPGEVVATTADAQETRQRRNSGSNATVAGEDALPE 130
>03_02_0394 -
8081172-8081330,8082015-8082134,8082223-8082271,
8083193-8083371,8083583-8083852,8084480-8084631,
8085694-8085715,8086314-8086430
Length = 355
Score = 28.7 bits (61), Expect = 1.3
Identities = 19/75 (25%), Positives = 30/75 (40%)
Frame = +2
Query: 107 IFAPAILDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEV 286
+F I + K + K LA V N + ++ IGYP S + + T+
Sbjct: 237 VFKELIFEPKEYKIFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIPNKVWTDE 296
Query: 287 DFKEATTIKEYIKDP 331
D E + YI+ P
Sbjct: 297 DGVEHVEVNFYIRGP 311
>01_06_1676 -
39084928-39085016,39085462-39085555,39085664-39085750,
39085941-39086073,39086451-39086724,39086863-39086989,
39087095-39087345,39087476-39087575
Length = 384
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +2
Query: 65 SYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAAL 190
SYG V V DSGT A LD + +FL VA V+ L
Sbjct: 83 SYGRVYYAVLDSGTKIAVKKLDSNENEPTSEFLTQVALVSRL 124
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 169 SSKELLAKVLRLDVENCRREDGTGVVHLFDNKTIRK 62
+ K LL K++RLDV+N R+ L+ N +I K
Sbjct: 408 NKKSLLGKIMRLDVDNPPRQSEIANQSLWGNYSIPK 443
>04_04_0095 - 22775340-22776017
Length = 225
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 88 GVRLRYHLRAGNSRHQAGGPSREVPCWSG 174
G+ +RY++ AG+ + + +REVPC G
Sbjct: 37 GLFVRYYVPAGDGKRRIRVDTREVPCGGG 65
>04_01_0142 +
1640472-1640611,1641618-1641744,1642233-1642425,
1642793-1643349
Length = 338
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 130 HQAGGPSREVPCWSGQRGRALVVHRVPDGR 219
H AG P W G+R RA H +P GR
Sbjct: 13 HLAGQPPLLTAGWGGRRERARRSHAMPTGR 42
>03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600
Length = 274
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 174 PTWPRSRCPSGTRRSRL 224
PT PRSR PS +RR R+
Sbjct: 149 PTTPRSRAPSSSRRRRM 165
>03_01_0610 +
4478521-4478715,4480003-4480090,4480255-4480321,
4480561-4480679,4480809-4480904,4481019-4481074,
4481400-4481485,4481914-4482048,4482216-4482300
Length = 308
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +2
Query: 71 GLVVKQVYDSGTIFAPAILDI--KPEDLREKFLAG-VANVAALSLSIGYPTVASAPHSIA 241
G ++V+D + L++ P KFLA + + + YP A A H I
Sbjct: 130 GAGTERVFDEVIQYNDGSLEVAFSPSKAMGKFLASELPRTTETTCKVLYPASAKAGHEIQ 189
Query: 242 NGFKN 256
NG N
Sbjct: 190 NGLSN 194
>06_01_1023 -
7996240-7996369,7997166-7997260,7997430-7997515,
7998034-7998184
Length = 153
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +1
Query: 109 LRAGNSRHQAGGPSREVPCWSGQRGRAL----VVHRVPDGRVCA 228
+ AG R + GG P W G R RA+ + VP GR A
Sbjct: 7 VEAGRRRRRGGGSDPPSPMWGGGRRRAVSRRGKLVAVPVGRAAA 50
>05_05_0036 -
21758409-21758531,21758891-21759206,21759964-21761121,
21761236-21761333
Length = 564
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 53 ISPFSYGLVVKQVYDSGTIFAPAILDIKPEDLREKFLAGVANVAALSL 196
+ P +G +Q G + A ++DI P+ L K+L + A LSL
Sbjct: 317 VPPCGFGSFHQQYRIDGKLVAVGVVDILPKCLSSKYLFWDPDFAFLSL 364
>05_03_0155 - 9002049-9002134,9002825-9004139
Length = 466
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 162 RNFSRRSSGLMSRIAGAKMVPESYTCLTTRPYEKGEMFNMLR 37
+ F R +GL++R A P+SY R + F+M R
Sbjct: 187 KTFFWRHTGLLTRSAAGHGPPDSYAVAMLREHSNSGTFHMWR 228
>02_02_0528 +
11199799-11200470,11201850-11201951,11202858-11203487,
11204287-11204547
Length = 554
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 151 REVPCWSGQRGRALVVHRVP-DGRVCASFHRE 243
+EV CW GQR V DG++ S +RE
Sbjct: 349 KEVDCWKGQRSSKTSDFAVSNDGKLIISMNRE 380
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 26.6 bits (56), Expect = 5.1
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Frame = -1
Query: 276 TAAMASRFLKPFAME*GADATVGYPMDN--ESAATLATPARNFSRRSSGLMSRIAGAKMV 103
T +RF PF + ++ YP D+ + A T S R L + + +
Sbjct: 473 TGPNTARFYPPFHTTNSKEGSISYPNDHKPQPEARNVTENSRLSGREPTLTDTASDSFLN 532
Query: 102 PESYTCLTTRPYEKGEMFNMLRRVASEAPT 13
PES +T P+E+ E+ ++ EA T
Sbjct: 533 PES----STNPHEQ-ELMGCVKGPTKEAYT 557
>10_06_0088 - 10538037-10539463,10539696-10539789
Length = 506
Score = 26.2 bits (55), Expect = 6.7
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +2
Query: 92 YDSGTIFAPAIL---DIKPEDLREKFLAGVANVAAL--SLSIG 205
YD+G + + D+K D + + LAG+ NV AL SL+ G
Sbjct: 31 YDTGVMSGAMLFIKEDLKTNDTQVQVLAGILNVCALVGSLTAG 73
>04_04_0969 -
29787617-29787919,29788019-29788180,29788962-29789093,
29789708-29789760,29790518-29791007
Length = 379
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 98 SGTIFAPAILDIKP-EDLREKFLA 166
SGT F P I+ +KP ED+ K +A
Sbjct: 166 SGTSFTPHIITVKPNEDVASKIMA 189
>03_02_0052 +
5285061-5285106,5285711-5285754,5286317-5286539,
5286664-5286827,5286918-5288144
Length = 567
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 40 QHVEHLSLFVWSCCQTGVR-LRYHLRAGNSRHQAGGPSREVPCWSGQRG 183
Q+ H +L W GV +R ++A AGG + + CWS +G
Sbjct: 96 QNDTHYTLSAWLQVSDGVADVRVVVKAAGDFIHAGGVAAKSGCWSMLKG 144
>08_01_0799 + 7734031-7735102,7735453-7735475
Length = 364
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 74 LVVKQVYDSGTIFAPAILDIKPEDLREKF 160
++VK+ S T+ A ++++ P DL E F
Sbjct: 153 VIVKESMASNTVKAHELINVPPSDLSENF 181
>07_03_1783 + 29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 25.8 bits (54), Expect = 8.9
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = -1
Query: 270 AMASRFLKPFAME*GADATVGYPMDNESAATLATPARNFSRRSSGLMSRIAGAKMVPESY 91
A S+ ++ FA E P D +A+ ++TP S L S +A ++ + Y
Sbjct: 822 ASISKRIEDFANEKLNSVLEVVPADESAASEMSTPEAPKDGGSENLSSSVADSQTLMSLY 881
Query: 90 TCLTTRPY 67
L T+ +
Sbjct: 882 FALCTKKH 889
>04_04_0475 +
25500470-25500609,25500697-25500794,25502806-25502915,
25502998-25503293,25503399-25503474,25503577-25503688,
25503955-25504004,25504090-25504392,25504446-25504547,
25505463-25505635,25505745-25505917,25505997-25506106,
25506180-25506329,25506726-25506881,25507000-25507116,
25507277-25507474,25507809-25507952
Length = 835
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 154 EVPCWSGQRGRALVVHRVPDGRVCASFHRER 246
EV CW + + H DG++ AS E+
Sbjct: 550 EVNCWRTNNSKVVCCHFSSDGKILASAGHEK 580
>03_05_0291 - 22837412-22838128
Length = 238
Score = 25.8 bits (54), Expect = 8.9
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = -1
Query: 195 NESAATLATPARNFSRRSSGLMSRIAGAKMVPESYTCLTTRPYEKGEMFNMLRRVASEAP 16
+E AAT A+PA + S SG S G V E C T P G+ +R E P
Sbjct: 126 DEPAATTASPAASSSNSGSG--SGGGGGNKVHECSVCKKTFP--TGQALGGHKRCHYEGP 181
>03_02_0265 + 6974432-6974665
Length = 77
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 219 ATVGYPMDNESAATLATPARNFSRRSS 139
A + +P D AT TP R RRSS
Sbjct: 15 ARIAFPCDGGRQATSRTPTRQRRRRSS 41
>01_06_1474 + 37630471-37631736,37631965-37632028,37632928-37633124
Length = 508
Score = 25.8 bits (54), Expect = 8.9
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 157 LLAKVLRLDVENCRRE-DGTGVVHLFDNKTIRKGRDVQHVEKSSF 26
LL ++++ + +CRR D T VVH FDN + G + V +S F
Sbjct: 416 LLGSLIQVSLLSCRRRADFTKVVH-FDNVSSGLGGKLFTVWRSEF 459
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,228,800
Number of Sequences: 37544
Number of extensions: 178162
Number of successful extensions: 617
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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