Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_I05
(342 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 27 0.063
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 25 0.33
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 25 0.33
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 21 4.1
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 21 4.1
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 21 4.1
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 21 4.1
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 21 4.1
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 21 4.1
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 21 4.1
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 21 5.4
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 21 5.4
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 5.4
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 20 7.2
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 20 7.2
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 20 7.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.5
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.5
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.5
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.5
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.5
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 20 9.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 20 9.5
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 27.1 bits (57), Expect = 0.063
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 190 LVVHRVPDGRVCASFHRERFQEPARHRC 273
L +H +P+ +V F +R +E A RC
Sbjct: 396 LTIHTIPEVKVTPRFQAKRLKEEANIRC 423
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 24.6 bits (51), Expect = 0.33
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 53 ISPFSYGLVVKQVYDSGTIFAP 118
ISP + GLV + + SGT+ AP
Sbjct: 264 ISPVTRGLVRRGILQSGTLNAP 285
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 24.6 bits (51), Expect = 0.33
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 53 ISPFSYGLVVKQVYDSGTIFAP 118
ISP + GLV + + SGT+ AP
Sbjct: 264 ISPVTRGLVRRGILQSGTLNAP 285
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 4.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 104 YRSRTPV*QQDHTKRERC 51
YR + +D T+RERC
Sbjct: 59 YRETSKERSRDRTERERC 76
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 4.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 104 YRSRTPV*QQDHTKRERC 51
YR + +D T+RERC
Sbjct: 59 YRETSKERSRDRTERERC 76
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 4.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 104 YRSRTPV*QQDHTKRERC 51
YR + +D T+RERC
Sbjct: 59 YRETSKERSRDRTERERC 76
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 4.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 104 YRSRTPV*QQDHTKRERC 51
YR + +D T+RERC
Sbjct: 59 YRETSKERSRDRTERERC 76
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 4.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 104 YRSRTPV*QQDHTKRERC 51
YR + +D T+RERC
Sbjct: 59 YRETSKERSRDRTERERC 76
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 4.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 104 YRSRTPV*QQDHTKRERC 51
YR + +D T+RERC
Sbjct: 59 YRETSKERSRDRTERERC 76
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 4.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -2
Query: 104 YRSRTPV*QQDHTKRERC 51
YR + +D T+RERC
Sbjct: 59 YRETSKERSRDRTERERC 76
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.6 bits (41), Expect = 5.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 110 RWYRSRTPV*QQDHTKRER 54
R YR R+ +D T+RER
Sbjct: 57 RKYRERSKERSRDRTERER 75
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 20.6 bits (41), Expect = 5.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 110 RWYRSRTPV*QQDHTKRER 54
R YR R+ +D T+RER
Sbjct: 57 RKYRERSKERSRDRTERER 75
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 20.6 bits (41), Expect = 5.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 110 RWYRSRTPV*QQDHTKRER 54
R YR R+ +D T+RER
Sbjct: 290 RKYRERSKERSRDRTERER 308
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 20.2 bits (40), Expect = 7.2
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 122 ILDIKPEDLREKFLAGV 172
++ KP+ R K LAG+
Sbjct: 266 LIQSKPQHARRKVLAGI 282
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 20.2 bits (40), Expect = 7.2
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 74 DHTKRERCST 45
DHTKRE ST
Sbjct: 491 DHTKREEDST 500
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 20.2 bits (40), Expect = 7.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 115 REDGTGVVHLFDNKTIRKGRDVQHVEKSSF 26
++D HL+ N T + RDV ++K +F
Sbjct: 455 KKDSISHYHLYTNLTALRKRDV--LKKGNF 482
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 169 SSKELLAKVLRLD 131
SSK LLA VL +D
Sbjct: 337 SSKSLLANVLDID 349
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 169 SSKELLAKVLRLD 131
SSK LLA VL +D
Sbjct: 337 SSKSLLANVLDID 349
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 169 SSKELLAKVLRLD 131
SSK LLA VL +D
Sbjct: 337 SSKSLLANVLDID 349
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 169 SSKELLAKVLRLD 131
SSK LLA VL +D
Sbjct: 337 SSKSLLANVLDID 349
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 169 SSKELLAKVLRLD 131
SSK LLA VL +D
Sbjct: 337 SSKSLLANVLDID 349
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 169 SSKELLAKVLRLD 131
SSK LLA VL +D
Sbjct: 337 SSKSLLANVLDID 349
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 9.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 169 SSKELLAKVLRLD 131
SSK LLA VL +D
Sbjct: 405 SSKSLLANVLDID 417
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 9.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -3
Query: 169 SSKELLAKVLRLD 131
SSK LLA VL +D
Sbjct: 405 SSKSLLANVLDID 417
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,468
Number of Sequences: 438
Number of extensions: 1764
Number of successful extensions: 24
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 7839909
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
- SilkBase 1999-2023 -