Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I04
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   147   1e-36
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   2.0  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    27   2.0  
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    26   4.7  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   6.2  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    25   6.2  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    25   8.2  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   8.2  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  147 bits (356), Expect = 1e-36
 Identities = 69/120 (57%), Positives = 86/120 (71%)
 Frame = +1

Query: 40  IPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHT 219
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 220 KVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRASLILFP 399
           KVRAGRGFTL E++A+G++   A TIGI VD RRRN+S ESLQ NV+R+K Y A LI+FP
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFP 127



 Score = 38.3 bits (85), Expect = 8e-04
 Identities = 22/64 (34%), Positives = 36/64 (56%)
 Frame = +3

Query: 393 FP*RARKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLRGAR 572
           FP +A +  KG+A +      T +   ++P+ Q A +  A+PITE+ KNF A+  L   R
Sbjct: 126 FPRKAGQPKKGDATDVSGAEQTDVAA-VLPITQEAVEE-AKPITEEAKNFNAFSTLSNER 183

Query: 573 SIAK 584
           + A+
Sbjct: 184 AYAR 187


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 420 KGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDE 533
           + E N ++ +  TQ +    PV+++ PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 141 LFYSILLSTMTTSWLIKPCLHKS--LPILMEMAIWYHIIPFTH 19
           L  S+ L  +T +WL++    +S   P  + +A W  I  FTH
Sbjct: 204 LAISMFLGFITLTWLLRCIKSQSGVQPAQISLAFWVFIFVFTH 246


>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 443 LFFISFTLQYLSCPSGKRIREALY 372
           L F++ TLQ +SCP+  RI ++L+
Sbjct: 230 LGFLNSTLQDISCPNITRIGQSLF 253


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 459 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 563
           Q   P+ PVQ   P   A+P  ED    +  + LR
Sbjct: 430 QPSSPVQPVQNVKPAQPAQPSLEDAAKRRVEEMLR 464


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 274 NPSFARTIGIAVDPRRRNKSVESLQINV 357
           NPS A    +A D    ++S+ES   NV
Sbjct: 396 NPSVAAASNVAADQSTEDESIESTSTNV 423


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 83  FTNLCQSLWKWPFGIILFPLPILKDPR 3
           +T L   +W+  FGI LFP  I+  PR
Sbjct: 217 YTKL-NGVWRIQFGIALFPAVIVLIPR 242


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 398 GKRIREALYSFNL*TLICNDSTDLLRLRGST 306
           GK + EA  + +L T +C++ TD L L+G +
Sbjct: 542 GKSLHEA--ALDLLTKLCDEPTDTLSLKGKS 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,461
Number of Sequences: 5004
Number of extensions: 43015
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)