Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I04
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...   156   1e-38
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...   155   2e-38
05_04_0020 - 17199627-17199947,17200129-17200203,17200301-172003...    27   8.4  
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696...    27   8.4  

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score =  156 bits (379), Expect = 1e-38
 Identities = 71/127 (55%), Positives = 91/127 (71%)
 Frame = +1

Query: 19  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 198
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 199 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYR 378
            T++Y+ K RAGRGFTL E++A+G+   FA TIGI+VD RR+N+S+E LQ NVQRLK Y+
Sbjct: 61  QTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120

Query: 379 ASLILFP 399
           A L++FP
Sbjct: 121 AKLVIFP 127



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = +3

Query: 393 FP*RARKVLKGEANEEERKLATQLRGPLMPVQQTAPKSV-ARPITEDEKNFKAYQYLRGA 569
           FP RARKV  G++  EE   ATQ++G  MP+ +   +SV    +T+D K FKAY  LR  
Sbjct: 126 FPRRARKVKAGDSTPEELATATQVQGDYMPITRGEKRSVEVVKVTDDMKAFKAYAKLRVE 185

Query: 570 R 572
           R
Sbjct: 186 R 186


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score =  155 bits (376), Expect = 2e-38
 Identities = 70/127 (55%), Positives = 91/127 (71%)
 Frame = +1

Query: 19  MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 198
           M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R               LRP+V+C
Sbjct: 1   MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60

Query: 199 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYR 378
            T++Y+ K RAGRGFTL E++A+G+   +A TIGI+VD RR+N+S+E LQ NVQRLK Y+
Sbjct: 61  QTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120

Query: 379 ASLILFP 399
           A L++FP
Sbjct: 121 AKLVIFP 127



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = +3

Query: 393 FP*RARKVLKGEANEEERKLATQLRGPLMPVQQTAPKSV-ARPITEDEKNFKAYQYLRGA 569
           FP RARKV  G++  EE   ATQ++G  MP+ +   +SV    +T++ K FKAY  LR  
Sbjct: 126 FPRRARKVKAGDSTAEELATATQVQGDYMPIARGEKRSVEVVKVTDEMKAFKAYAKLRVE 185

Query: 570 R 572
           R
Sbjct: 186 R 186


>05_04_0020 -
           17199627-17199947,17200129-17200203,17200301-17200384,
           17200483-17200562,17201354-17201508,17202602-17203215
          Length = 442

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 344 NDSTDLLRLRGSTAIPIVLAKEGFNPEALISRRVNPLPARTFV**RT-VGQRTTGLR 177
           + ST      GSTA    LA+  F+ E  +SRR   LPAR FV  +  +G +  GLR
Sbjct: 73  SSSTPAAAAAGSTAAN-PLAR--FSVEPAVSRRQQQLPARQFVGGKVPLGLKRKGLR 126


>03_02_0952 +
           12666750-12666777,12666965-12667185,12669464-12669649,
           12670147-12670212,12670335-12670427,12670528-12670659,
           12670794-12670895,12670993-12671070,12671148-12671219,
           12672185-12672292,12672368-12672465,12672904-12672964,
           12673058-12673120,12673228-12673284,12673571-12673729,
           12674310-12674441,12674516-12674602,12674667-12674738,
           12675899-12675985,12676052-12676427,12676727-12676788,
           12676946-12677014,12677096-12677142,12677189-12677342,
           12677874-12677999
          Length = 911

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +1

Query: 4   RGSFKMGKGNNMIPNGHFHKDWQRFV-KTW 90
           RG F  G   +  P G+F K W   V  TW
Sbjct: 95  RGKFGYGSSAHSFPTGNFFKSWSTSVDPTW 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,769,983
Number of Sequences: 37544
Number of extensions: 273135
Number of successful extensions: 618
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)