Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_I03
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 127 1e-30
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 121 5e-29
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 29 0.27
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 0.48
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 28 0.83
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 27 1.1
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 27 1.1
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 27 1.9
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 26 2.5
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 4.5
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.9
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 5.9
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 5.9
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 7.8
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 7.8
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 25 7.8
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 7.8
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 25 7.8
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 127 bits (306), Expect = 1e-30
Identities = 62/101 (61%), Positives = 76/101 (75%), Gaps = 1/101 (0%)
Frame = +1
Query: 121 KQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLD 300
KQMV D+LHPGK +SK EIREKLA+MYK + V FG +T+FGGG+STGFALIYD+ +
Sbjct: 21 KQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLRTHFGGGRSTGFALIYDSTE 80
Query: 301 LAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 420
KKFEP +RL R G E ++ R+QRK+RKNR KKV GT
Sbjct: 81 SMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGT 121
Score = 31.1 bits (67), Expect = 0.090
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = +3
Query: 57 MSEGTATIRTRKFMTNRLL 113
MSE TIRTRKFMTNRLL
Sbjct: 1 MSEAV-TIRTRKFMTNRLL 18
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 121 bits (292), Expect = 5e-29
Identities = 57/101 (56%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Frame = +1
Query: 121 KQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLD 300
KQMV D+LHPGK +SK ++REKL +MYK V FG +T++GGG++TGFALIYD ++
Sbjct: 21 KQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLRTHYGGGRTTGFALIYDDVE 80
Query: 301 LAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 420
KKFEP +RL R G E ++ R+QRK+RKNR KKV GT
Sbjct: 81 AMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGT 121
Score = 31.1 bits (67), Expect = 0.090
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = +3
Query: 57 MSEGTATIRTRKFMTNRLL 113
MSE TIRTRKFMTNRLL
Sbjct: 1 MSEAV-TIRTRKFMTNRLL 18
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 29.5 bits (63), Expect = 0.27
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = -3
Query: 246 RLETEHENYVWRHFVHFSELFTDLSFADG-RFSW---MQDIAYHLLGAPTICWS*IYAYE 79
R+ +E+ V+R + F+ +LS D R +W +Q +A LL P W+ + +
Sbjct: 961 RVGDYNESMVYRRKIPFNCELKNLSIIDIIRNNWWLFLQGLAIDLLKLP---WAVFHIFL 1017
Query: 78 SSLFLHSFLII 46
LF HSFL+I
Sbjct: 1018 RYLFSHSFLVI 1028
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 28.7 bits (61), Expect = 0.48
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 67 PSLIFDYFRDFGVKTHVSPSLV 2
P L+FDYF D G K HV+P+ V
Sbjct: 53 PDLLFDYFID-GHKIHVNPNAV 73
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 0.83
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 310 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 408
K+ P R G + +KR RK++ E+KN K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 175 EIREKLAKMYKVTPDVVFVFGFKTNFGG 258
+++E LAK YK+ P +F F T+ G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -3
Query: 246 RLETEHENY-VWRHFVHFSELFTDLSFADGRFSWMQDIAYHL 124
RLE EH V R+ L +F D R+ W Q+I+ L
Sbjct: 261 RLEVEHPGEEVLRNNRILGRLMPSRAFGDARYKWSQEISERL 302
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 350 MKRRGRHANSVRNVRTE*RRYEVPRN 427
+KRR R N++R + E RRY +P++
Sbjct: 28 VKRRKRLFNAIRKLWNERRRYRMPKD 53
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 418 YLVPSSFCSYVPYAVCVSASSFHTGRDERVCVLAQTSL 305
Y VP + A+ V A H G+D+ C LA+ L
Sbjct: 65 YDVPFLINDRIDVALAVGADGVHIGQDDMDCALARKIL 102
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 458 HHFLTAAPTLDFLVPRTFFILFL 390
H LT P LDF++ T +LF+
Sbjct: 310 HDSLTQFPNLDFILKTTALVLFI 332
>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 133
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 423 LGTSYLLHSVLTFLTLFACRPLLFIQAVTSESVFWL 316
L TS+ S+L L + PLLF+ + S S + L
Sbjct: 17 LNTSFSFSSLLCILCFYKDGPLLFLYSPLSASYYCL 52
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -3
Query: 273 SGRFATTEVRLETEHENYVWRHFVHFSELFTDLSFADGRFSWMQDI 136
+G +A E HENY H E++ D + R ++ DI
Sbjct: 60 NGMYAGAENHNVENHENYTMVGHDHMEEVYGDDLVNEPRIAYSSDI 105
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 332 SLCFGSNFFAKSSVS*IKANPVDLP 258
S CF +N F+KSS+ I +N +P
Sbjct: 766 SFCFINNLFSKSSLKAISSNDSIVP 790
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 24.6 bits (51), Expect = 7.8
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +1
Query: 304 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 408
+KK + + + +K +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 7.8
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +1
Query: 310 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 411
+F KH L RHG EKKR R+Q + R KKV
Sbjct: 58 EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 24.6 bits (51), Expect = 7.8
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +1
Query: 352 EKKRPTRKQRKERKNRMKKVRGT 420
E+ +P ++ +E +NR+ ++RGT
Sbjct: 90 ERLKPQDERTQEERNRVDEIRGT 112
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 87 RKFMTNRLLAPQADGMRCLASRKTDR 164
++ +T+ L+P A+ CLA KT R
Sbjct: 653 KELLTSTFLSPSAESQVCLAEIKTIR 678
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/46 (21%), Positives = 23/46 (50%)
Frame = +1
Query: 106 DCWRPKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFK 243
+C R + VC + K ++++ + E L K+ + D + ++ K
Sbjct: 640 NCLRVLEKVCKYSNIRKEIIARSNLHENLKKLLAIPHDKLRLYALK 685
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,570
Number of Sequences: 5004
Number of extensions: 40292
Number of successful extensions: 139
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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