Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_I03
(473 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 139 1e-33
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 135 1e-32
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 103 2e-27
06_03_1139 + 27925970-27925985,27926427-27927079 29 1.4
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 28 4.4
01_06_0355 + 28657833-28660665,28660762-28661126 28 4.4
07_03_0665 + 20470160-20471542 27 5.8
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 5.8
10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986 27 7.7
02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354 27 7.7
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 139 bits (336), Expect = 1e-33
Identities = 64/100 (64%), Positives = 80/100 (80%), Gaps = 1/100 (1%)
Frame = +1
Query: 121 KQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNFGGGKSTGFALIYDTL 297
KQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+FGGGKSTGF LIYD L
Sbjct: 26 KQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHFGGGKSTGFGLIYDNL 85
Query: 298 DLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 417
D AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG
Sbjct: 86 DAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +3
Query: 75 TIRTRKFMTNRLLA 116
T+RTRKFMTNRLL+
Sbjct: 11 TLRTRKFMTNRLLS 24
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 135 bits (327), Expect = 1e-32
Identities = 63/100 (63%), Positives = 79/100 (79%), Gaps = 1/100 (1%)
Frame = +1
Query: 121 KQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNFGGGKSTGFALIYDTL 297
KQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+FGGGKSTGF LIYD L
Sbjct: 26 KQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLIYDNL 85
Query: 298 DLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 417
D AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG
Sbjct: 86 DAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +3
Query: 75 TIRTRKFMTNRLLA 116
T+RTRKFMTNRLL+
Sbjct: 11 TLRTRKFMTNRLLS 24
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 103 bits (248), Expect(2) = 2e-27
Identities = 47/74 (63%), Positives = 60/74 (81%), Gaps = 1/74 (1%)
Frame = +1
Query: 121 KQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNFGGGKSTGFALIYDTL 297
KQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+FGGGKSTGF LIYD L
Sbjct: 26 KQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLIYDNL 85
Query: 298 DLAKKFEPKHRLAR 339
D AKK+EPK+RL R
Sbjct: 86 DAAKKYEPKYRLIR 99
Score = 35.9 bits (79), Expect(2) = 2e-27
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +1
Query: 340 HGLYEKKRPTRKQRKERKNRMKKVRG 417
+GL K +RKQ KERKNR KK+RG
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRG 153
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +3
Query: 75 TIRTRKFMTNRLLA 116
T+RTRKFMTNRLL+
Sbjct: 11 TLRTRKFMTNRLLS 24
>06_03_1139 + 27925970-27925985,27926427-27927079
Length = 222
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -3
Query: 465 TVTSLLDGRTYFRFLGTSYLLHSVLTFLTLFACRPLLFIQAVTSESVFW 319
TV L GRT+ R + + + ++L +L+L+ L + S+S+ W
Sbjct: 16 TVREALQGRTWIRDISGALGIQAILEYLSLWTSLQSLDALSEESDSIIW 64
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 115 RPKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFV 231
RP D+L + KT +R L Y + PD +FV
Sbjct: 717 RPHPSNLDILSIARSVCCKTSLRAALKAKYGILPDNIFV 755
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 236 PNTKTTSGVTLYILASFSRISVLLTVGFPGCKTSHTI 126
PN S +TL L + + L +GFP CK H +
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPL 706
>07_03_0665 + 20470160-20471542
Length = 460
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 187 FHGSQFC*RSVFLDARHRIPSAWGAN-NLLVINLRVRI 77
FHG FC S F HR S+ + LV+++ R+
Sbjct: 104 FHGGSFCTESAFCRTYHRYASSLASRAGALVVSVEYRL 141
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 343 GLYEKKRPTRKQRKERKNRMKK 408
G+YE++R R+Q KER+ + K
Sbjct: 999 GVYERERNMRQQEKERRKQQSK 1020
>10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986
Length = 700
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 112 WRPKQMVCDVLHPGKPTVSKTEIREKLAKM 201
W P M+ ++LH P+ S REKLA++
Sbjct: 545 WNPYCMLKELLHHDGPSCSSIPRREKLAEI 574
>02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354
Length = 847
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 198 FSELFTDLSFADGRFSWMQDIAYHLLGAPTICWS*IYAYESSLFLHS 58
F++ T++ D W+ D YHLL PT + FLHS
Sbjct: 180 FADRLTEVLSPDDDLVWIHD--YHLLALPTFLRKRFPRAKVGFFLHS 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,793,755
Number of Sequences: 37544
Number of extensions: 256323
Number of successful extensions: 743
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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