Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_I03
(473 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal pro... 153 6e-38
Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical pr... 42 2e-04
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 40 0.001
AF039053-9|AAN84838.1| 131|Caenorhabditis elegans Hypothetical ... 28 3.0
AF039053-8|AAC25878.1| 178|Caenorhabditis elegans Hypothetical ... 28 3.0
AL032635-4|CAA21601.1| 140|Caenorhabditis elegans Hypothetical ... 27 5.2
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 27 6.9
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 27 6.9
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 27 6.9
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 27 9.1
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 27 9.1
Z11126-7|CAO82061.1| 522|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z11126-6|CAA77471.2| 480|Caenorhabditis elegans Hypothetical pr... 27 9.1
>AF036706-2|ABD94090.1| 131|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 24 protein.
Length = 131
Score = 153 bits (371), Expect = 6e-38
Identities = 70/101 (69%), Positives = 83/101 (82%), Gaps = 1/101 (0%)
Frame = +1
Query: 121 KQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLD 300
KQMV +V+HPG+PTV K +IREK+AK+YK TPD V FGF++ GGGKS GFAL+YDT+D
Sbjct: 21 KQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIGGGKSKGFALVYDTID 80
Query: 301 LAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 420
AKKFEPK+RL R GL K ++P RKQRKERKNR KKVRGT
Sbjct: 81 FAKKFEPKYRLVRMGLATKVEKPGRKQRKERKNRQKKVRGT 121
>Z29115-2|CAA82363.1| 91|Caenorhabditis elegans Hypothetical
protein T26G10.3 protein.
Length = 91
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 127 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 225
MV +V+ PG+PT K +IREK+A Y + PD +
Sbjct: 1 MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +1
Query: 271 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 399
GF L+YDT D A K++P+H + H R + +RKE++ R
Sbjct: 54 GFTLVYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95
>AF039053-9|AAN84838.1| 131|Caenorhabditis elegans Hypothetical
protein C45H4.14b protein.
Length = 131
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 283 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 408
I LD KK E KHR A+ +K+ ++Q K+ K +KK
Sbjct: 17 ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 57
>AF039053-8|AAC25878.1| 178|Caenorhabditis elegans Hypothetical
protein C45H4.14a protein.
Length = 178
Score = 28.3 bits (60), Expect = 3.0
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 283 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 408
I LD KK E KHR A+ +K+ ++Q K+ K +KK
Sbjct: 64 ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 104
>AL032635-4|CAA21601.1| 140|Caenorhabditis elegans Hypothetical
protein Y51A2A.6 protein.
Length = 140
Score = 27.5 bits (58), Expect = 5.2
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = +1
Query: 238 FKTNFGGGKSTGFALI----YDTLDLAKKFEPKHRLARHGLYEKKRPTRKQR 381
F N GGGK+ GF+ + + KK H HG + RPTR R
Sbjct: 21 FVKNNGGGKNHGFSSASSSSSSSSEEGKKHGHGHHHHNHGRPSRPRPTRPPR 72
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 352 EKKRPTRKQRKERKNRMKKVR 414
E+KR +K+R ERK +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
F07A11.6c protein.
Length = 2392
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 352 EKKRPTRKQRKERKNRMKKVR 414
E+KR +K+R ERK +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
F07A11.6b protein.
Length = 2407
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 352 EKKRPTRKQRKERKNRMKKVR 414
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 352 EKKRPTRKQRKERKNRMKKVR 414
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 352 EKKRPTRKQRKERKNRMKKVR 414
E+KR +K+R ERK +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 352 EKKRPTRKQRKERKNRMKKVR 414
E+KR +K+R ERK +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 352 EKKRPTRKQRKERKNRMKKVR 414
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
F07A11.6a protein.
Length = 2211
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 352 EKKRPTRKQRKERKNRMKKVR 414
E+KR +K+R ERK +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146
>Z81114-2|CAB03286.1| 604|Caenorhabditis elegans Hypothetical
protein T04D3.2 protein.
Length = 604
Score = 26.6 bits (56), Expect = 9.1
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +1
Query: 175 EIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYE 354
+IR+++ +MY V V F + +IYD + LAKK + +L + L E
Sbjct: 424 KIRKEIPEMYGFIQTPVTVKTFIVQMEEERRKKTKIIYDKVQLAKKKNKEIKLKKKVLEE 483
Query: 355 KKR 363
+++
Sbjct: 484 EEK 486
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 299 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 174
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 299 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 174
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 299 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 174
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 299 SSVS*IKANPVDLPPPKFVLKPNTKTTSGVTLYILASFSRIS 174
+SVS I + V + PP V+ P T TT + + A SR++
Sbjct: 1247 NSVSCIISTGVTVTPPTTVVVPTTATTLNPAIPMCAQCSRLN 1288
>Z11126-7|CAO82061.1| 522|Caenorhabditis elegans Hypothetical
protein ZK643.3b protein.
Length = 522
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 449 LTAAPTLDFLVPRTFFILFLRSLRC 375
LT + ++ FL+P F + LR +RC
Sbjct: 228 LTYSASVIFLIPAVFLLTLLRPIRC 252
>Z11126-6|CAA77471.2| 480|Caenorhabditis elegans Hypothetical
protein ZK643.3a protein.
Length = 480
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 449 LTAAPTLDFLVPRTFFILFLRSLRC 375
LT + ++ FL+P F + LR +RC
Sbjct: 228 LTYSASVIFLIPAVFLLTLLRPIRC 252
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,977,317
Number of Sequences: 27780
Number of extensions: 227651
Number of successful extensions: 705
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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