Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I01
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.2  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   2.1  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   8.5  
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    25   8.5  
SPCC16C4.21 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   8.5  
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    25   8.5  

>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 220 PPEENRNNHIVYYQ--DLLPVINITRTFNHLYQHH 318
           P +  R  H+ Y Q  D+  ++N+ R ++H Y  H
Sbjct: 68  PKDSVRYAHLPYAQAFDIAEIVNLIREYSHKYHKH 102


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 211 MSPPPEENRNNHIVYYQDLLPVINITRTFNHLYQHH*IYTPSLSLTSYNQQ 363
           +S  PE +R + I  Y   LP  N     N L++HH   TPS   ++Y+ +
Sbjct: 260 LSTSPEAHRTS-IYSYSANLP--NYYNEHNELHEHHNPQTPSSPESAYSPE 307


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 441 EREKDYFDRSDQIKILEDQ 497
           E EKDY D++  +++LE+Q
Sbjct: 331 EIEKDYSDQASTLQVLENQ 349


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 36  IRKNNGKSRPVDLRELH*CLESQFSGPS-FYVSLSEKSTRYHK 161
           I   N +  P  ++ L   + S  + P  F  SLSEK + YHK
Sbjct: 338 ISSQNKEELPSSIKYLEKTIMSDQATPHPFSKSLSEKGSSYHK 380


>SPCC16C4.21 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 81

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 290 VPLTIYISTIKYILHHYLSLPTT 358
           VPLT  +ST+   L  +L LPTT
Sbjct: 36  VPLTYSVSTLHAELTDHLYLPTT 58


>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 19  LKCKQI*EKIMEKVDPLTSENFISAWNHNFPDHPFT--LASL 138
           +K K+  E+ + K+  L S      + +NF D PFT  LASL
Sbjct: 170 IKTKREAEREISKISNLRSIFLRPGFMYNFNDRPFTGALASL 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,566
Number of Sequences: 5004
Number of extensions: 36338
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)