Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I01
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238     32   0.23 
07_01_0018 + 121378-122130                                             29   2.1  
01_03_0243 + 14154122-14154190,14154373-14154415,14154491-141545...    28   3.7  
01_01_0354 + 2804640-2804703,2804911-2806451                           27   6.5  
06_01_0680 + 4983054-4983080,4983243-4983590                           27   8.6  

>09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238
          Length = 472

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +1

Query: 193 CDSDILMSPPPEENRNNHIVYYQDLLPVINITRTFNHLYQHH*IYTPSLSLT 348
           C + ++  PPPE + +N +     L      T T +H + HH +     +L+
Sbjct: 297 CQTTVVAPPPPESSSSNKMFSSDGLTTATTTTTTAHHHHHHHQVLDSDCALS 348


>07_01_0018 + 121378-122130
          Length = 250

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 309 SAPLNIYSITISHFLQPTADTSHSMLMLLFNVMLFKTQRLTYIGEREKD 455
           ++PL +YS T    ++ T D    + +++++ +LF   +  YI  R  D
Sbjct: 79  TSPLYVYSTTFDGGIRHTDDLLGVLSLIIYSFLLFTIIKYVYIALRAND 127


>01_03_0243 +
           14154122-14154190,14154373-14154415,14154491-14154552,
           14155214-14155310,14157663-14157733,14158338-14158694
          Length = 232

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 265 DLDSKLCDYCDSLLVVGT*VYRCHIQSD*TFLTLHL*Y 152
           D+D + C +C+ LL +   + RC ++ +  F T+ L Y
Sbjct: 172 DMDMRACSHCECLLCITHEIVRCDLKRE-FFCTIWLAY 208


>01_01_0354 + 2804640-2804703,2804911-2806451
          Length = 534

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 49  MEKVDPLTSENFISAWNHNFPDHPFTLASLKSPQDIISAVLKMFNRIGC--DSD 204
           MEKV  L  +  +   + N   + + L + + P+D+IS + +M  + GC  DSD
Sbjct: 373 MEKVYELLDDMEVKGVSPNNMTYSYILKTTEKPKDVISLMQRM-EKSGCRLDSD 425


>06_01_0680 + 4983054-4983080,4983243-4983590
          Length = 124

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 103 NFPDHPFTLASLKS-PQDIISAVLKMFNRIGC 195
           NFP+ P T+ +  S P+++++      NR+GC
Sbjct: 78  NFPESPPTVVARTSDPREVLAYATSHANRLGC 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,173,611
Number of Sequences: 37544
Number of extensions: 204740
Number of successful extensions: 481
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)