Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_I01
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53150-12|AAA96132.1|  115|Caenorhabditis elegans Hypothetical p...    28   3.3  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AC006671-5|AAF39915.1|  349|Caenorhabditis elegans Hypothetical ...    28   4.4  
AF045642-10|AAC02587.1|  459|Caenorhabditis elegans Hypothetical...    27   7.7  

>U53150-12|AAA96132.1|  115|Caenorhabditis elegans Hypothetical
           protein F20A1.10 protein.
          Length = 115

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 127 LASLKSPQDIISAVLKMFNRIGCDSDILMSPPPEENRNNHIVYYQ 261
           L +LK  +D   A+ K+F  I  D+D  +   PE ++  +  Y +
Sbjct: 56  LEALKDNKDDKEAIKKVFEEIKTDTDAYIKTQPEADQKAYATYIE 100


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +1

Query: 31   QI*EKIMEKVDPLTSENFISAWNHNFPD---HPF 123
            QI EK ++ V+P   +NF   W  N  D   HPF
Sbjct: 1078 QIEEKCLQPVEPGPCKNFADRWYFNVDDGTCHPF 1111


>AC006671-5|AAF39915.1|  349|Caenorhabditis elegans Hypothetical
           protein K08A2.2 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 85  ISAWNHNFPDHPFTLASLK-SPQDIISAVLKMFNRI 189
           ++ W  +FPD+ F + SLK +P+ I +A L  F  I
Sbjct: 61  LAQWRDSFPDYKFKVISLKGAPRVIATAHLCTFRPI 96


>AF045642-10|AAC02587.1|  459|Caenorhabditis elegans Hypothetical
           protein C17H12.9 protein.
          Length = 459

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 118 PFTLASLKSPQDIISAVLKMFNRIGCDSDILMSPPPEENRNNHIVYYQDLLPV 276
           P   A+L SP  I  A+L M + +  + D +    PE + +NH + + D L V
Sbjct: 11  PLLSAALGSP--IHHAILSMDDEVDGNCDDVDDISPESHHDNHFIDFTDDLVV 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,186,023
Number of Sequences: 27780
Number of extensions: 200542
Number of successful extensions: 517
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)