Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_H24
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 64 2e-11
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo... 54 2e-08
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 34 0.012
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.25
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 29 0.44
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 27 1.3
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 27 1.8
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 3.1
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ... 26 3.1
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 26 4.1
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom... 25 5.4
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 63.7 bits (148), Expect = 2e-11
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 5/148 (3%)
Frame = +2
Query: 92 AARAVGVPIEVEIVNLAKKEQLKENFVKLNPQHCVPTLKE--DDGFVLWESRAIACYLAE 265
A + + + E VN +K EQ + LNP VPTL + ++ + +WES AI YLA+
Sbjct: 21 ALKELDLTYETRYVNFSKNEQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLAD 80
Query: 266 KYGTDDQF-YPKDLKRRALVNQRLYFDSSALYVKIRAICFPIIFLGETEIK--EPLRDDL 436
KY T+ + P+D V Q L+F +S + + ++ E I R+++
Sbjct: 81 KYDTERKISLPRDHPEYYKVIQYLFFQASGQGIIWGQAGWFSVYHQELVISAITRYRNEI 140
Query: 437 NVTLGFLDLFLKESKWVAGDSLTIADTS 520
LG L+ LK+ ++ + TIAD S
Sbjct: 141 KRVLGVLEDILKDRDYLVANRFTIADLS 168
>SPCC965.07c |gst2||glutathione S-transferase
Gst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 53.6 bits (123), Expect = 2e-08
Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Frame = +2
Query: 32 MAPAKLYHFPVSGPSRG-ALLAARAVGVPIEVEIVNLAKKEQLKENFVKLNPQHCVPTLK 208
MA LY GP+ +LA + + + E + K EQ + + LNP VPTL
Sbjct: 1 MAHFTLYSH-AGGPNPWKVVLALKELNLSYEQIFYDFQKGEQKCKEHLALNPNGRVPTLV 59
Query: 209 E--DDGFVLWESRAIACYLAEKYGTDDQF-YPKDLKRRALVNQRLYFDSSALYVKIRAIC 379
+ ++ + +WES AI YLA+KY TD + D + Q L+F +S V
Sbjct: 60 DHKNNDYTIWESDAILIYLADKYDTDRKISLSFDDPEYYKLIQYLFFQASGQGVIWGQAG 119
Query: 380 FPIIFLGETEIK--EPLRDDLNVTLGFLDLFLKESKWVAGDSLTIADTS 520
+ F E + R+++ LG L+ LK+ ++ + TIAD S
Sbjct: 120 WFNFFHHEPVVSAVTRYRNEIKRVLGVLEDILKDRDYLVANKYTIADLS 168
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 34.3 bits (75), Expect = 0.012
Identities = 40/151 (26%), Positives = 59/151 (39%), Gaps = 2/151 (1%)
Frame = +2
Query: 68 GPSRGALLAARAVGVPIEVEIVNLAKKEQLKENFVKLNPQHCVPTLKEDDGFVLWESRAI 247
G R + A +EVE V++ + + P +P DGF L E+ AI
Sbjct: 11 GSPRVLFCVSVAAVAGVEVEHVDV-QPHNFPADLAAKFPLQKMPVFVGKDGFPLSETLAI 69
Query: 248 ACYLAEKYGTDDQFYPKDLKRRALVNQRLYFDSSALYVKIRAICFPIIFLGETEIKEPLR 427
A YLA T + +A V Q F +S L R I P +F + +
Sbjct: 70 AFYLASLNKT-RALNGTTAEEKAKVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKE 128
Query: 428 DDLNVTLGF--LDLFLKESKWVAGDSLTIAD 514
+ + L F D L ++ G LT+AD
Sbjct: 129 AETAIALIFARFDEELASKTYLVGSRLTLAD 159
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 29.9 bits (64), Expect = 0.25
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = -1
Query: 267 FSAK*QAIARLSHKTNPSSSFKVGTQCCGFNFTKFSFNCSFFAKFTISTSI 115
FS K AIA HK P SS + + F+ +K +FN F+ S S+
Sbjct: 163 FSLKNAAIATSYHKFKPLSSNSLSSSGMHFSASKQAFNSPLLQTFSPSPSV 213
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 29.1 bits (62), Expect = 0.44
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 8 VTLPFRLAMAPAKLYHFPVSGPSRGALLAARAVGVPIEVEIVNLAKKEQ 154
V+ PF++A+A + LYH + G S +AA + P + + N+ KK Q
Sbjct: 374 VSGPFQIALALSNLYH--LMGYSAFTGVAASVILFPCNIIVANVYKKFQ 420
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 27.5 bits (58), Expect = 1.3
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 15/150 (10%)
Frame = +2
Query: 110 VPIEVEIVNLAKKEQLKENFVKLNPQHCVPTLKEDDGFVLWESRAIACYLAEKYGTDDQF 289
VP E+++ + + + KL+P P + DDG ES AI +L KYG +
Sbjct: 24 VPYEIKVYDRVDG-RAPPAYTKLSPLGKSPIVV-DDGVTYIESAAILEHLVRKYGPSFKP 81
Query: 290 YPKDLKRRALVNQRLYFDSSALY------------VKIRAICFPII---FLGETEIKEPL 424
+D+ ++F ++L V + I F I F+ + K L
Sbjct: 82 SEEDVAELEKYELWMHFSEASLMPFIWASHVLDLSVNMTPIFFRYIVRQFVNGIKSKY-L 140
Query: 425 RDDLNVTLGFLDLFLKESKWVAGDSLTIAD 514
+ + L ++D L +++ AG+ T AD
Sbjct: 141 SKETFLNLDYIDNHLASNEYFAGEQFTAAD 170
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 144 FAKFTISTSIGTPTALAASKAPREGPLTGKW 52
F++F S + TA +A P +GP++G W
Sbjct: 189 FSRFGTIISENSLTASSAGFTPSKGPISGNW 219
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 205 KGRRWICFMGKSCYCLLLSGKVWYRRS 285
K RW+ K YC++ SGK+ + +S
Sbjct: 1059 KNNRWVAGYWKKKYCIVDSGKLIFYKS 1085
>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 449 RG*HLGHLLKVPLFLSHQEKLL 384
RG LGH LKV +F SH E ++
Sbjct: 228 RGLPLGHPLKVEIFNSHTEYII 249
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 4 RGYVTVSISNGTRKTLPFSSEWTLTRSFT 90
RGYVTV + TL +S+ T++ S+T
Sbjct: 96 RGYVTVESDMSSHNTLDRNSKPTVSHSYT 124
>SPAC23H4.06 |gln1||glutamate-ammonia ligase
Gln1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 218 GFVLWESRAIACYLAEKYGTDDQFYPKDL 304
G LW SR + +AE +G F+PK +
Sbjct: 216 GDQLWMSRFLLHRIAEDFGVKISFHPKPI 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,929
Number of Sequences: 5004
Number of extensions: 45237
Number of successful extensions: 123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -