Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H24
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   6.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.0  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 257 LAEKYGTDDQFYPKDLKRRALV 322
           LAE+ GTD+ +  K LK+  ++
Sbjct: 2   LAERKGTDELYAIKILKKDIII 23


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 433 PKCYPRVFGFILKRKQM 483
           P C P++F F L   Q+
Sbjct: 153 PMCSPKLFAFDLNTSQL 169


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 236 FPIKQIHRLPLK 201
           FP K  H+LPLK
Sbjct: 134 FPSKMDHQLPLK 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,491
Number of Sequences: 438
Number of extensions: 2987
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)