Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_H23
(239 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF... 47 4e-07
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ... 46 5e-07
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 25 1.8
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar... 25 1.8
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 24 2.3
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual 24 3.1
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa... 23 4.1
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 23 5.4
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 23 7.1
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 22 9.4
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 22 9.4
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 22 9.4
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 22 9.4
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 22 9.4
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 22 9.4
>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
4F complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 46.8 bits (106), Expect = 4e-07
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +2
Query: 23 GLISLEKKQRNSDLDRFWLDVVLLMIGENFE-NSEEICGAVVNVRAKLD*IGIWTADASK 199
G + + K + S+LD WL +VL IGE + +E+ G V N+R I +WT + +
Sbjct: 139 GKWAYQSKHKGSNLDELWLYMVLAAIGETLDPTGKEVTGVVCNMRKGFYRIAVWTRNCND 198
Query: 200 QHATIEIGRKIKD 238
+ +IG + K+
Sbjct: 199 KDVLEKIGLRFKE 211
>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 218
Score = 46.4 bits (105), Expect = 5e-07
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 23 GLISLEKKQRNSD-LDRFWLDVVLLMIGENFE-NSEEICGAVVNVRAKLD*IGIWTADAS 196
G + + K R + LD WL VL IGE + +E+ G V+N+R + +WT +
Sbjct: 113 GKWAFQNKGRGGNALDEMWLTTVLAAIGETLDPTGQEVMGVVINMRKGFYRLAVWTKSCN 172
Query: 197 KQHATIEIGRKIK 235
+ +EIG + K
Sbjct: 173 NREVLMEIGTRFK 185
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 24.6 bits (51), Expect = 1.8
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = -3
Query: 198 FEASAVQIPI*SNLALTLTTAPQISSEFSKFSPIIRRTTSNQKRSKSELRCFFSKLMSPS 19
F +S +I LTL+T+P E S S I R SN + + + FS L S S
Sbjct: 372 FSSSTAEIDPYHFQGLTLSTSPISGVESSSLSSAISRNQSNLSSFQQQQQ--FSALQSIS 429
>SPAC24C9.09 |||mitochondrial threonine-tRNA
ligase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 156 ALTLTTAPQISSEFSKFSPIIRRTTSNQKRSKSELRCF 43
A T + ++ F+ FSP+ R S + LRCF
Sbjct: 154 ASTERSYKELPLRFADFSPLHRNEASGALSGLTRLRCF 191
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 24.2 bits (50), Expect = 2.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 173 GIWTADASKQHATI 214
GIW+ DASK H I
Sbjct: 758 GIWSKDASKHHREI 771
>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
Length = 312
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +2
Query: 89 LLMIGENFENSEEICGAVVNVRAKLD*IGIWTADA 193
+++ G+N ENSEE N +G+ A
Sbjct: 55 MMITGDNVENSEEALNLATNYECFTSTVGVHPCQA 89
>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
exchanger|Schizosaccharomyces pombe|chr 3|||Manual
Length = 412
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 234 LIFLPISIVACCFEASAVQIPI*SNLAL 151
L+F+PI ++A FE +A + I + LA+
Sbjct: 66 LVFVPIGLIAGWFEWNAKSVFILNMLAI 93
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = -3
Query: 120 EFSKFSPIIRRTTSNQKRSKSELRCFFSKLMSPSCR 13
+F + P++RR +S + + ++ L PSC+
Sbjct: 74 QFRELDPLLRRLSSTSLLAFTRHLKYYLSLYLPSCK 109
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 105 SPIIRRTTSNQKRSKSELRCFFSKLMSPSCRIP 7
+PI+R + + +S+L S +SPS IP
Sbjct: 420 TPIVRYKNPVKNKKRSQLTSRISSSVSPSNVIP 452
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -2
Query: 169 LIQFGSNIDNSTTNFFRIFKIFTNHKE 89
L+ + NI+ + NFFR + N E
Sbjct: 450 LLAYVLNIEQALENFFRTVRALMNETE 476
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 92 GEPHLTRNDLNQNYVAF 42
G H T+NDL Q+YVA+
Sbjct: 151 GTTH-TQNDLYQSYVAY 166
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/37 (24%), Positives = 21/37 (56%)
Frame = -3
Query: 165 SNLALTLTTAPQISSEFSKFSPIIRRTTSNQKRSKSE 55
SN+ A + SEF+++ P+++ + S + ++ E
Sbjct: 639 SNIETEFLNALESVSEFNEYGPVLKSSPSPIELTEQE 675
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 59 DLDRFWLDVVLLMIGE 106
+LD FW+D +L + G+
Sbjct: 149 ELDDFWMDKILRLSGK 164
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 22.2 bits (45), Expect = 9.4
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -3
Query: 225 LPISIVACCFEASAVQIPI*SNLALTLTTAPQISSEFSKFSPIIRRTTSNQKRSKSELRC 46
L + +CC + + NL L T QIS E K +++N + +SE+
Sbjct: 363 LRVFFSSCCSKIQSEIYSTNRNLLSVLQTVEQISKEVDK----EYFSSTNHQLIRSEIGE 418
Query: 45 FFSKLMSPSCR 13
+ L SCR
Sbjct: 419 YCKTLDINSCR 429
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 150 LEPNWIKLESGQLTLQSSTPLSKSV 224
+ P+WIKL S + + TP +S+
Sbjct: 641 IPPDWIKLSSTRSLFRFHTPKIQSL 665
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 890,631
Number of Sequences: 5004
Number of extensions: 13664
Number of successful extensions: 53
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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