Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_H23
(239 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 65 9e-12
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 64 1e-11
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 52 5e-08
03_02_0768 + 11015855-11016063,11016285-11016359,11018296-110188... 30 0.23
08_01_0326 + 2928668-2928821,2931530-2931741,2931835-2931927,293... 27 1.6
03_02_0467 + 8707777-8707892,8708030-8708096,8708190-8708260,870... 27 1.6
08_02_0758 + 20848078-20849579,20849660-20849850,20849944-208501... 27 2.8
09_06_0206 - 21580240-21580467,21580544-21580591,21581533-215823... 26 3.7
04_01_0381 - 5061901-5061914,5062044-5062100,5062268-5063231 26 3.7
03_01_0035 - 322993-323280,323385-323528,324055-324180,324827-32... 25 6.5
01_01_0277 + 2274383-2274465,2274889-2274955,2275040-2275110,227... 25 6.5
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 64.9 bits (151), Expect = 9e-12
Identities = 29/58 (50%), Positives = 40/58 (68%)
Frame = +2
Query: 65 DRFWLDVVLLMIGENFENSEEICGAVVNVRAKLD*IGIWTADASKQHATIEIGRKIKD 238
D WL +L MIGE F+ +EICGAVV+VR K + I IWT +A+ + A I IG++ K+
Sbjct: 141 DTMWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQISIGKQWKE 198
>10_08_0323 +
16743358-16743566,16744536-16744704,16744834-16744959,
16745813-16745878,16745997-16746047
Length = 206
Score = 64.5 bits (150), Expect = 1e-11
Identities = 26/63 (41%), Positives = 41/63 (65%)
Frame = +2
Query: 50 RNSDLDRFWLDVVLLMIGENFENSEEICGAVVNVRAKLD*IGIWTADASKQHATIEIGRK 229
R + L+ WL+ ++ +IGE F+ SEEICG V +VR + D + +WT AS + + IG+K
Sbjct: 115 RKTTLENMWLETLMALIGEQFDESEEICGVVASVRQRGDKLALWTRTASNEAVQVNIGKK 174
Query: 230 IKD 238
K+
Sbjct: 175 WKE 177
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 52.4 bits (120), Expect = 5e-08
Identities = 20/56 (35%), Positives = 36/56 (64%)
Frame = +2
Query: 68 RFWLDVVLLMIGENFENSEEICGAVVNVRAKLD*IGIWTADASKQHATIEIGRKIK 235
RFW D+VL+++G+ + S+++CG V++VR D + +W +AS A + + IK
Sbjct: 139 RFWEDLVLVLVGDQLDYSDDVCGVVLSVRFNEDILSVWNRNASDHQAVMTLRDSIK 194
>03_02_0768 +
11015855-11016063,11016285-11016359,11018296-11018833,
11019356-11020465
Length = 643
Score = 30.3 bits (65), Expect = 0.23
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 83 VVLLMIGENFENSEEICGAVVNVRAKLD*IGIWTADASKQHATIE 217
V+L+M+ E+ E E + V V AKLD + T + SK+ T+E
Sbjct: 13 VMLVMVDEDVELWEALEKGDVTVEAKLDGVEYRTMELSKEDRTVE 57
>08_01_0326 +
2928668-2928821,2931530-2931741,2931835-2931927,
2931997-2932119,2933372-2933650
Length = 286
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -3
Query: 153 LTLTTAPQISSEFSKFSPIIRRTTSNQKRSKSELRCFFSKLMSPSCRIP 7
+T T Q++S K+ +R+T N+K+ +S L + MSP+ P
Sbjct: 83 VTTRTPTQVASHAQKY--FLRQTNPNKKKRRSSLFDMMATDMSPAPNCP 129
>03_02_0467 +
8707777-8707892,8708030-8708096,8708190-8708260,
8708629-8708746,8708820-8708893,8709278-8709333,
8709448-8709531,8709611-8709698,8709786-8709863,
8710335-8710391,8710606-8711044
Length = 415
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 174 PI*SNLALTLTTAPQISSEFSKFSPIIRRTTS 79
P+ N+ L+L +P+I S +KF P I TS
Sbjct: 89 PLYQNVPLSLALSPRIFSAVAKFKPDIIHATS 120
>08_02_0758 +
20848078-20849579,20849660-20849850,20849944-20850179,
20850254-20850973
Length = 882
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 172 NLIQFGSNIDNSTTNFFRIFKIFTNHKEN 86
NL++ D+ NF + K F NH EN
Sbjct: 783 NLVEKDLASDDKNNNFLQCMKSFLNHAEN 811
>09_06_0206 -
21580240-21580467,21580544-21580591,21581533-21582321,
21582779-21582979
Length = 421
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 162 NLALTLTTAPQISSEFSKFSPIIRRTTSNQ 73
N+ L T P S F+PI+ RT SNQ
Sbjct: 180 NVLLVSTINPSKDPVRSGFTPILERTVSNQ 209
>04_01_0381 - 5061901-5061914,5062044-5062100,5062268-5063231
Length = 344
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 222 PISIVACCFEASAVQIPI*SNLALTLTTAPQISSE 118
P+ + + QIPI S AL+ +T PQ+ +E
Sbjct: 204 PLPSIPITLGSPGAQIPINSQSALSTSTTPQVITE 238
>03_01_0035 -
322993-323280,323385-323528,324055-324180,324827-324882,
325497-325517,327153-327420,327904-329787
Length = 928
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +3
Query: 150 LEPNWIKLESGQLTLQSSTPLSKSVGRL 233
L+P+ +++++G+ + T LSKS GR+
Sbjct: 732 LQPHLLQIDAGEEIIPKITALSKSNGRV 759
>01_01_0277 +
2274383-2274465,2274889-2274955,2275040-2275110,
2275550-2275667,2275755-2275828,2276094-2276149,
2276237-2276320,2276422-2276509,2276602-2276679,
2276814-2276870,2277074-2277578
Length = 426
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 174 PI*SNLALTLTTAPQISSEFSKFSPIIRRTTS 79
P+ + L+L +P+I SE +KF P I +S
Sbjct: 78 PMYGKVPLSLALSPRIISEVAKFKPDIIHASS 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,446,576
Number of Sequences: 37544
Number of extensions: 75946
Number of successful extensions: 166
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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