Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_H23
(239 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation fa... 69 6e-13
AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation fa... 65 7e-12
AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation fa... 64 1e-11
U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation fact... 57 1e-09
Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical pr... 56 3e-09
AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical... 53 2e-08
AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical... 53 2e-08
AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation i... 53 2e-08
U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation fact... 42 4e-05
AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation i... 42 4e-05
AC024801-8|AAK95893.1| 285|Caenorhabditis elegans Hypothetical ... 28 1.0
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ... 27 2.3
Z73905-4|CAI91175.1| 536|Caenorhabditis elegans Hypothetical pr... 26 4.1
U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical pr... 25 5.4
U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical pr... 25 5.4
AF067216-9|AAC17520.2| 646|Caenorhabditis elegans Hypothetical ... 25 5.4
AC024771-4|AAK70661.1| 227|Caenorhabditis elegans Hypothetical ... 25 5.4
Z81076-10|CAB03059.1| 394|Caenorhabditis elegans Hypothetical p... 25 7.2
Z81082-1|CAB03094.2| 291|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z68215-3|CAA92452.3| 415|Caenorhabditis elegans Hypothetical pr... 25 9.5
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot... 25 9.5
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot... 25 9.5
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 25 9.5
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 25 9.5
>AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform a protein.
Length = 248
Score = 68.5 bits (160), Expect = 6e-13
Identities = 29/71 (40%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = +2
Query: 26 LISLEKKQRNSDLDRFWLDVVLLMIGENF-ENSEEICGAVVNVRAKLD*IGIWTADASKQ 202
L+ ++K++R LD +WL++++ ++GE F E + ICGAVVNVR K D + +WT DA++
Sbjct: 109 LVVVDKQRRTQLLDHYWLELLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRD 168
Query: 203 HATIEIGRKIK 235
+ IG+ +K
Sbjct: 169 DVNLRIGQVLK 179
>AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform b protein.
Length = 251
Score = 64.9 bits (151), Expect = 7e-12
Identities = 29/72 (40%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
Frame = +2
Query: 26 LISLEKKQRNSDL-DRFWLDVVLLMIGENF-ENSEEICGAVVNVRAKLD*IGIWTADASK 199
++ +K QR + L D +WL++++ ++GE F E + ICGAVVNVR K D + +WT DA++
Sbjct: 111 VVDKQKLQRRTQLLDHYWLELLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATR 170
Query: 200 QHATIEIGRKIK 235
+ IG+ +K
Sbjct: 171 DDVNLRIGQVLK 182
>AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform c protein.
Length = 250
Score = 64.1 bits (149), Expect = 1e-11
Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Frame = +2
Query: 26 LISLEKKQRNSDLDRFWLDVVLLMIGENF-ENSEEICGAVVNVRAKLD*IGIWTADASKQ 202
++ + ++R LD +WL++++ ++GE F E + ICGAVVNVR K D + +WT DA++
Sbjct: 111 VVDKQLQRRTQLLDHYWLELLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRD 170
Query: 203 HATIEIGRKIK 235
+ IG+ +K
Sbjct: 171 DVNLRIGQVLK 181
>U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 2 protein.
Length = 228
Score = 57.2 bits (132), Expect = 1e-09
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +2
Query: 26 LISLEKKQRNSDLDRFWLDVVLLMIGENFENS-EEICGAVVNVRAKLD*IGIWTADASKQ 202
LI++EK + +D W ++++ MIGE F + E +CG V NVR K I +WT +++
Sbjct: 94 LITIEKGRTPEIMDTIWTEILMAMIGEQFSDDIESLCGIVCNVRGKGSKISVWTTNSADD 153
Query: 203 HATIEIGRKIK 235
A + IG +K
Sbjct: 154 GANLRIGGVLK 164
>Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical
protein F53A2.6 protein.
Length = 212
Score = 56.0 bits (129), Expect = 3e-09
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 26 LISLEKKQRNSDLDRFWLDVVLLMIGENF-ENSEEICGAVVNVRAKLD*IGIWTADASKQ 202
LI ++K + +D WL++++ ++GE F ++ E ICG V NVR K I +WT D +
Sbjct: 89 LIVIDKGKTPEMVDAIWLEILMALVGEQFGKDMESICGLVCNVRGKGSKISVWTKDCNDD 148
Query: 203 HATIEIGRKIKD 238
+ IG +K+
Sbjct: 149 ETNMRIGVVLKE 160
>AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical
protein Y57A10A.30b protein.
Length = 201
Score = 53.2 bits (122), Expect = 2e-08
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +2
Query: 26 LISLEKKQRNSDLDRFWLDVVLLMIGENF-ENSEEICGAVVNVRAKLD*IGIWTADASKQ 202
LI + K + LD WL+++L +IGE F ++ E ICG V NVR + I +WT + +
Sbjct: 86 LIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCNDD 145
Query: 203 HATIEIGRKIKD 238
+ IG +K+
Sbjct: 146 DTNMRIGVVLKE 157
>AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical
protein Y57A10A.30a protein.
Length = 240
Score = 53.2 bits (122), Expect = 2e-08
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +2
Query: 26 LISLEKKQRNSDLDRFWLDVVLLMIGENF-ENSEEICGAVVNVRAKLD*IGIWTADASKQ 202
LI + K + LD WL+++L +IGE F ++ E ICG V NVR + I +WT + +
Sbjct: 125 LIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCNDD 184
Query: 203 HATIEIGRKIKD 238
+ IG +K+
Sbjct: 185 DTNMRIGVVLKE 196
>AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 5 protein.
Length = 201
Score = 53.2 bits (122), Expect = 2e-08
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +2
Query: 26 LISLEKKQRNSDLDRFWLDVVLLMIGENF-ENSEEICGAVVNVRAKLD*IGIWTADASKQ 202
LI + K + LD WL+++L +IGE F ++ E ICG V NVR + I +WT + +
Sbjct: 86 LIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNVRGQGSKISVWTKNCNDD 145
Query: 203 HATIEIGRKIKD 238
+ IG +K+
Sbjct: 146 DTNMRIGVVLKE 157
>U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 4 protein.
Length = 212
Score = 42.3 bits (95), Expect = 4e-05
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +2
Query: 68 RFWLDVVLLMIGENFENSEEICGAVVNVRAKLD*IGIWTADASKQHATIEIGRKIK 235
R W ++++ +IGE F +E+CGAV ++R + D I +W +A T I ++
Sbjct: 122 RIWENLLMAIIGEQFLVGDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLR 177
>AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 4 protein.
Length = 212
Score = 42.3 bits (95), Expect = 4e-05
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +2
Query: 68 RFWLDVVLLMIGENFENSEEICGAVVNVRAKLD*IGIWTADASKQHATIEIGRKIK 235
R W ++++ +IGE F +E+CGAV ++R + D I +W +A T I ++
Sbjct: 122 RIWENLLMAIIGEQFLVGDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLR 177
>AC024801-8|AAK95893.1| 285|Caenorhabditis elegans Hypothetical
protein Y50D7A.9 protein.
Length = 285
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = -3
Query: 198 FEASAVQIPI*SNLALTLTTAPQISSEFSKFSP-----IIRRTTSNQKRSKSELRCFFSK 34
F A + + N + P++ F P I+ TSN+K +++LR +F+K
Sbjct: 95 FRAQGLPLDTLKNFLQKMKDKPEVEYSFDIIGPSGIFLIVTAETSNKKAFENDLRKYFNK 154
Query: 33 L 31
L
Sbjct: 155 L 155
>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
protein H06I04.5 protein.
Length = 1138
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 190 VSCPDSNLIQFGSNIDNSTTNFFRIFKIFTNHKENH 83
V C + Q G ID+ T NF R+++ F N EN+
Sbjct: 133 VECTRFDDFQKGDTIDSITANFPRLYRDF-NKTENY 167
>Z73905-4|CAI91175.1| 536|Caenorhabditis elegans Hypothetical
protein C32C4.7 protein.
Length = 536
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 11 IRHEGLISLEKKQRNSDLDRFWLDVVLLMIGENFENSEEICGAVVN 148
+RH G ISLE KQ + ++ + + ++ +F+ + EI +N
Sbjct: 407 VRHNGSISLE-KQDLGNFEKLRVSLAKILKDNSFQENAEILARQLN 451
>U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical
protein F49E10.2a protein.
Length = 790
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 153 EPNWIKLESGQLTLQSSTPLSKSV 224
+P W K+++GQ TL P+SK V
Sbjct: 701 QPWWQKVQTGQNTLPPLFPVSKRV 724
>U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical
protein F49E10.2b protein.
Length = 842
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 153 EPNWIKLESGQLTLQSSTPLSKSV 224
+P W K+++GQ TL P+SK V
Sbjct: 701 QPWWQKVQTGQNTLPPLFPVSKRV 724
>AF067216-9|AAC17520.2| 646|Caenorhabditis elegans Hypothetical
protein C35E7.4 protein.
Length = 646
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 178 DSNLIQFGSNIDNSTTNFFRIFKIFTNHKENHI 80
D +LI N N T F+ ++ FTNH H+
Sbjct: 85 DESLIFSAFNHFNKTEGFY-VYNSFTNHIHEHV 116
>AC024771-4|AAK70661.1| 227|Caenorhabditis elegans Hypothetical
protein Y40B10A.6 protein.
Length = 227
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 213 IVACCFEASAVQIPI*SNLAL-TLTTAP 133
+VA C E +AVQ P+ + L TLT AP
Sbjct: 15 VVAYCAEHTAVQTPLQAELQKETLTNAP 42
>Z81076-10|CAB03059.1| 394|Caenorhabditis elegans Hypothetical
protein F35C5.9 protein.
Length = 394
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 56 SDLDRFWLDVVLLMIGENFENSEEICGAVVNV 151
SDL R WLD+V ++ N + + N+
Sbjct: 48 SDLSRLWLDIVFVVDNSKNMNLYNVYNTISNL 79
>Z81082-1|CAB03094.2| 291|Caenorhabditis elegans Hypothetical
protein F42G4.5 protein.
Length = 291
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -3
Query: 153 LTLTTAPQISSEFSKFSPIIRRTTSNQKRSKSELRCFFSKLMSPSCR 13
++ T P + E K + I+R+ + +RS L S +PS R
Sbjct: 27 MSFLTVPGVEQEKKKSNSILRQLSQLSRRSIESLSSTLSSPRTPSPR 73
>Z68215-3|CAA92452.3| 415|Caenorhabditis elegans Hypothetical
protein C53B4.3 protein.
Length = 415
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 231 IFLPISIVACCFEASAVQIPI*SNLALTLTTAPQISSEFSKFSPI 97
+ L +S+VA C ++ + S + L TA ++S FSP+
Sbjct: 326 VSLGMSVVATCADSLLTALVDESEQGIVLGTATSLNSLVRTFSPL 370
>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
protein.
Length = 2693
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -3
Query: 165 SNLALTLTTAPQISSEFSKF--SPIIRRTTSNQKRSKSELRCFFSKLMSPSCR 13
+ L LT+ + + KF SPI +T +++++ELR FS +P+CR
Sbjct: 2571 AELELTVVQSTKTVGAKPKFNESPISVQTC---EKNRAELRASFSGTPAPACR 2620
>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
protein.
Length = 2708
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -3
Query: 165 SNLALTLTTAPQISSEFSKF--SPIIRRTTSNQKRSKSELRCFFSKLMSPSCR 13
+ L LT+ + + KF SPI +T +++++ELR FS +P+CR
Sbjct: 2586 AELELTVVQSTKTVGAKPKFNESPISVQTC---EKNRAELRASFSGTPAPACR 2635
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -3
Query: 165 SNLALTLTTAPQISSEFSKF--SPIIRRTTSNQKRSKSELRCFFSKLMSPSCR 13
+ L LT+ + + KF SPI +T +++++ELR FS +P+CR
Sbjct: 18397 AELELTVVQSTKTVGAKPKFNESPISVQTC---EKNRAELRASFSGTPAPACR 18446
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -3
Query: 165 SNLALTLTTAPQISSEFSKF--SPIIRRTTSNQKRSKSELRCFFSKLMSPSCR 13
+ L LT+ + + KF SPI +T +++++ELR FS +P+CR
Sbjct: 18412 AELELTVVQSTKTVGAKPKFNESPISVQTC---EKNRAELRASFSGTPAPACR 18461
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,880,641
Number of Sequences: 27780
Number of extensions: 74930
Number of successful extensions: 250
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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