Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H22
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    28   0.99 
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    26   4.0  
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy...    26   4.0  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   5.3  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    25   5.3  
SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.0  
SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc...    25   7.0  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   7.0  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   9.2  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   9.2  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 229 GIKCQKCLEYGHWSYEC 279
           G+KC  C + GH S+EC
Sbjct: 134 GVKCYSCGKIGHRSFEC 150



 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 229 GIKCQKCLEYGHWSYECT 282
           G +C  C E GH + ECT
Sbjct: 16  GPRCYNCGENGHQARECT 33


>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -3

Query: 277 IRSSNDRIPNTS 242
           +RSSNDRIP+TS
Sbjct: 77  VRSSNDRIPSTS 88


>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 67  VRVIEVGGHKSV-LIEIFSLPTHFHKRFF 150
           V+++E G +  + LI +  LPTHF   FF
Sbjct: 122 VKIVEEGSYPLIWLIRLSFLPTHFTTVFF 150


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -3

Query: 307 GASKSCVSLCIRSSNDRIPNTSGILCL 227
           G  ++ + LC + +ND +P+ +  LC+
Sbjct: 786 GRDRASIQLCEKLTNDYLPDWTDTLCI 812


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 223 PQGIKCQKCLEYGHWSYEC 279
           P G  C +C + GHW   C
Sbjct: 180 PPGYICYRCGQKGHWIQAC 198


>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 142

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 511 QTHHCCRCPKSLMNCPRRNLKSSLRNSCLNSPGSHLHVSFY*ALCNC 371
           QTHH    P   +   R  +K + R    N   SH H SF+  +  C
Sbjct: 35  QTHHYSTLPSCDLLLIRGEVKENARCFLHNPKISHQHHSFWSLIEGC 81


>SPCC1739.09c |cox13||cytochrome c oxidase subunit
           VIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 130

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 386 LIKRNVEMTARTVQTRVPQRA 448
           ++ RN+   +RT++T VP+RA
Sbjct: 3   MMNRNIGFLSRTLKTSVPKRA 23


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 370 HCCTVPLCWSSDSTSAPVSAMGAS 299
           HC  +P+C S+D  S  +   G S
Sbjct: 112 HCTGMPICASADRLSREIEMFGPS 135


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 499 CCRCPKSLMNCPRRNLKSSLRNSCLNS 419
           C RC KS   C R+      R++ LNS
Sbjct: 342 CSRCKKSKKGCDRQRPCGRCRDAGLNS 368


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 128 VGRLNISISTDL*PPTSITR--TQMNSLYKI 42
           +   N+SI+ DL PP  +T      NS++KI
Sbjct: 428 ISNTNLSITDDLLPPDFVTTFLRNANSIFKI 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,863,504
Number of Sequences: 5004
Number of extensions: 35671
Number of successful extensions: 96
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)