Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_H22
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0619 - 4961588-4962409 52 4e-07
06_03_0960 + 26324530-26324551,26324633-26325597 30 1.3
05_04_0359 + 20615362-20615549,20615701-20615767,20616126-206161... 29 1.7
11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715 29 3.1
11_06_0253 - 21716164-21717144 28 4.0
05_07_0219 - 28474661-28475146,28475979-28476644 28 4.0
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 28 4.0
02_02_0671 - 12811102-12811608 28 4.0
07_01_0781 - 6051139-6052305 28 5.3
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315... 28 5.3
08_02_0645 - 19666189-19666209,19666330-19666437,19667041-196671... 27 7.1
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 27 7.1
09_01_0032 - 541411-541737,542751-543752 27 9.3
04_03_0057 + 10407402-10407452,10407540-10407782,10408506-104089... 27 9.3
01_01_1124 + 8916863-8917090,8917745-8917936,8918115-8918280,891... 27 9.3
>11_01_0619 - 4961588-4962409
Length = 273
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/59 (40%), Positives = 35/59 (59%)
Frame = +1
Query: 235 KCQKCLEYGHWSYECTGKRKILMRPSRTQVLKLNLKTNKEGQCSNGSCKVPNKKKRGDD 411
+CQKC + GHW+YEC +R + RPSRTQ LK N K K + + P+ +K ++
Sbjct: 95 QCQKCFQPGHWTYECKNERVYISRPSRTQQLK-NPKLKKTAAPVSYQFQNPDLEKEKEE 152
>06_03_0960 + 26324530-26324551,26324633-26325597
Length = 328
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -1
Query: 303 HQNLAFPCAFVAPMTVFQTLLAFYALRKGSCQRRLLF--PCCLMPVVSSQSHSEKTFV 136
H N FP F+A QT + AL+ GS R+LLF C+ P + Q E + +
Sbjct: 85 HANSTFPADFIAANLQIQTNVVDAALKCGSV-RKLLFLGSSCIYPKFAPQPIPENSLL 141
>05_04_0359 +
20615362-20615549,20615701-20615767,20616126-20616191,
20616319-20616348,20616461-20616505,20617020-20617286
Length = 220
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/71 (25%), Positives = 27/71 (38%)
Frame = +3
Query: 108 RNI*STYTFSQTFFHYDFGNLQQXXXXXXXXXXXXXCLSSRHKMPEVFGIRSLELRMHRE 287
RN S Y F + G+ + C + ++ GIR LEL H +
Sbjct: 136 RNARSDYYFPAQSSNLSEGSFTERSLKAESSLSSSPCFQHQQEVELSGGIRELELGYHHD 195
Query: 288 TQDFDAPIADT 320
+DF A + T
Sbjct: 196 DRDFAASMPFT 206
>11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715
Length = 456
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 226 QGIKCQKCLEYGHWSYECTGKRKILMRPSRTQVLKLNLKTNKEG 357
+ ++C C GH+ +C ++K+LM ++ + +L N EG
Sbjct: 356 RSVECYTCGGRGHYMRDCPNQKKVLM--TKEGYVSESLSENSEG 397
>11_06_0253 - 21716164-21717144
Length = 326
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 237 MPEVFGIRSLELRMHRETQDFDAPIADTGAEVESEDQQRG 356
+PE +R+ E HRE +F A + GA + + G
Sbjct: 199 LPEPPRLRAAEAEEHREVSEFQAELVQLGAALNGDHDGEG 238
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 232 IKCQKCLEYGHWSYECTGKRKI 297
I+C++C ++GH++ EC RK+
Sbjct: 343 IECRRCGKFGHFADECDEPRKM 364
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = -3
Query: 373 CHCCTVPLCW---SSDSTSAPVSAMGASKSCVSLCIRSSNDRIPNT 245
C CC + CW + ++++A ++A ++ SC S+ +R + I N+
Sbjct: 86 CRCCLLCFCWIWLTGNTSTAKIAA--SAGSCYSVSLRDKHCCIENS 129
>02_02_0671 - 12811102-12811608
Length = 168
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = -3
Query: 376 NCHCCTVPLCWSSD---STSAPVSAMGASKSCVSLC 278
+CHCC +P + S S P+ GAS S +C
Sbjct: 78 HCHCCLLPTATAKAFYLSPSPPLLPFGASHSFAKVC 113
>07_01_0781 - 6051139-6052305
Length = 388
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 306 AHQNLAFPCAFVAPMTVFQTLL 241
A +N+ FPC + P+T F T+L
Sbjct: 311 ARKNILFPCFHLPPLTEFYTML 332
>01_01_0419 -
3146851-3147339,3148428-3148663,3148847-3149793,
3150258-3150356,3151128-3151501
Length = 714
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 232 IKCQKCLEYGHWSYECTGKRKI 297
I+C +C ++GH++ EC RK+
Sbjct: 674 IECHRCGKFGHFADECDEPRKM 695
>08_02_0645 -
19666189-19666209,19666330-19666437,19667041-19667152,
19667321-19667417,19667809-19667911,19668071-19668152,
19668519-19668665,19668763-19668863,19669037-19669231
Length = 321
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -3
Query: 373 CHCCTVPLCWSSDSTSAPVSAMGASKSCVSLC 278
C C PL SSD SAPVSA +S S C
Sbjct: 84 CPICYYPLISSSDQ-SAPVSAASSSSLECSTC 114
>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 370 HCCTVPLCWSSDSTSAPVSAMGASKS 293
H TVP WSS+++S P + G S +
Sbjct: 1492 HFLTVPDTWSSENSSGPSKSFGHSNN 1517
>09_01_0032 - 541411-541737,542751-543752
Length = 442
Score = 27.1 bits (57), Expect = 9.3
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +1
Query: 235 KCQKCLEYGHWSYECTGKRK 294
+C+ CL+YGH + +C ++
Sbjct: 403 RCEDCLQYGHRTRDCKNNKE 422
>04_03_0057 +
10407402-10407452,10407540-10407782,10408506-10408976,
10409058-10409483,10409559-10409618,10409694-10409807,
10409888-10409956
Length = 477
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 265 NDRIPNTSGILCLEERQLPAPPAFSLLLD 179
+DR P+ +G +EE + PA PA L D
Sbjct: 431 SDRTPSATGSHNIEEEEQPAVPAIPALAD 459
>01_01_1124 +
8916863-8917090,8917745-8917936,8918115-8918280,
8918373-8918794
Length = 335
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 369 IAALSLFVGLQIQLQHLCPRWAHQNLAFPCAFVAP 265
+A +L V QL+ CPR N FP FV+P
Sbjct: 220 MADYTLDVSYAAQLRQGCPRSGGDNNLFPLDFVSP 254
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,190,993
Number of Sequences: 37544
Number of extensions: 235231
Number of successful extensions: 813
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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