Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_H21
(386 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 147 6e-37
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 85 4e-18
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 78 4e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 75 4e-15
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 31 0.083
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 26 1.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 1.8
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 25 3.1
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 4.1
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 25 5.5
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 5.5
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 25 5.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 24 7.2
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 24 7.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 7.2
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 24 7.2
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 24 7.2
SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||... 24 9.6
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 9.6
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 24 9.6
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 24 9.6
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 24 9.6
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 9.6
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 24 9.6
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 147 bits (356), Expect = 6e-37
Identities = 69/104 (66%), Positives = 84/104 (80%)
Frame = +3
Query: 75 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 254
+SKIREEYPDR+M T+SV P+PK SDTVVEPYNATLS+HQLVEN+DET+CIDNEAL I
Sbjct: 152 LSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIF 211
Query: 255 FRTLKLSTPTYGDLNHLVSSPCLASPTASGSPGQIYADLRKLAV 386
TLK+ +P+Y DLNHLVS+ T+ PG++ +DLRKLAV
Sbjct: 212 ANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAV 255
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 85.0 bits (201), Expect = 4e-18
Identities = 42/102 (41%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Frame = +3
Query: 75 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 254
+ ++ EY + +SV P+P+VS +VVEPYN+ L+ H ++N+D T+ +DNEA YDIC
Sbjct: 158 LERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDIC 217
Query: 255 FRTLKLSTPTYGDLNHLVSSPCLASPTAS-GSPGQIYADLRK 377
R L + PTY +LN L++ ++S TAS G + DL +
Sbjct: 218 RRNLDIERPTYENLNRLIAQ-VVSSITASLRFAGSLNVDLNE 258
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 78.2 bits (184), Expect = 4e-16
Identities = 36/89 (40%), Positives = 58/89 (65%)
Frame = +3
Query: 75 ISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 254
+ ++ EY + +SV P+P+VS +VVEPYN+ L+ H ++ D T+ +DNE+ YDIC
Sbjct: 154 LERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDIC 213
Query: 255 FRTLKLSTPTYGDLNHLVSSPCLASPTAS 341
R L + P+Y +LN L++ ++S TAS
Sbjct: 214 RRNLDIERPSYENLNRLIAQ-VVSSITAS 241
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 74.9 bits (176), Expect = 4e-15
Identities = 40/100 (40%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Frame = +3
Query: 75 ISKIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 251
+ ++ + YP +I+ TYSV P S VSD VV+PYN+ L++ +L N D +DN AL I
Sbjct: 154 LERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHI 213
Query: 252 CFRTLKLSTPTYGDLNHLVSSPCLASPTASGSPGQIYADL 371
L PT+ N LVS+ AS T PG + DL
Sbjct: 214 AADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDL 253
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 30.7 bits (66), Expect = 0.083
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Frame = +1
Query: 31 TLSE-AVPAPVWAHYLSQRSVKSTPTES*THTQSSP----RPKYQTPSSNPTMRLSQCTN 195
T+S+ AVP+ +A+ +S RSV S T+S T++SP K S T+ S TN
Sbjct: 643 TVSDTAVPSMSFANNISSRSVISAATDSKPSTRTSPPFVNNTKPIVAKSPVTVTASSETN 702
Query: 196 --S*KTQTKHTVSITRHSTIFASARSN 270
S K K + ++ + +F RSN
Sbjct: 703 KKSQKINKKASPRVSLWTKLFGKFRSN 729
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 26.2 bits (55), Expect = 1.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 297 NHLVSSPCLASPTASGSPG 353
N+++S P SPTA G PG
Sbjct: 726 NNILSPPSFQSPTALGDPG 744
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 1.8
Identities = 18/73 (24%), Positives = 35/73 (47%)
Frame = +1
Query: 85 SVKSTPTES*THTQSSPRPKYQTPSSNPTMRLSQCTNS*KTQTKHTVSITRHSTIFASAR 264
S S+P+ S T T +SP + SS+ + S ++S + + + S + S+ +S+
Sbjct: 139 SSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 198
Query: 265 SNYLHPPMEISIT 303
S+ + IT
Sbjct: 199 SSSSSSSSSVPIT 211
Score = 24.6 bits (51), Expect = 5.5
Identities = 15/70 (21%), Positives = 34/70 (48%)
Frame = +1
Query: 61 WAHYLSQRSVKSTPTES*THTQSSPRPKYQTPSSNPTMRLSQCTNS*KTQTKHTVSITRH 240
W+ YL+ V T S + + ++ +PSS+ T + ++S + + + S +
Sbjct: 113 WSVYLTGNGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSS 172
Query: 241 STIFASARSN 270
S+ +S+ S+
Sbjct: 173 SSSSSSSSSS 182
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 3.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 207 TDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSS 314
T Y + E YDIC L T LNHL+S+
Sbjct: 256 TSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLSN 291
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.0 bits (52), Expect = 4.1
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 46 VPAPVWAHYLSQRSVKST-PTES*THTQSSPRPKYQTPSSNPTMRLSQCTNS*KTQTKHT 222
V APVW++ S T T S S P ++ SS P ++ + T+ T
Sbjct: 121 VTAPVWSNTSVPVSTPETSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVT 180
Query: 223 VSITRHSTIFASARSNYLHP 282
S S + A++ S+Y+ P
Sbjct: 181 SSYPASSEV-ATSTSSYVAP 199
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 168 YNATLSVHQLVENTDETYCI 227
+N L+V+ +V N DET+ I
Sbjct: 1419 FNVCLAVNTIVNNVDETFSI 1438
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 273 STPTYGDLNHLVSSPCLASPT 335
STPT D H SSP SPT
Sbjct: 235 STPTAPDFPHYNSSPSELSPT 255
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 24.6 bits (51), Expect = 5.5
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +3
Query: 102 DRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETY---CIDNEALYDICFRTLKL 272
D+ S+V T++EP + H+L E +TY +D+EA L L
Sbjct: 62 DKFEEVESLVYEFSTPSTLIEPNYLLTAWHELWEELQDTYMTPILDSEA-------NLLL 114
Query: 273 STPTYGDLNHLVSS 314
T YG ++ L S
Sbjct: 115 LTQFYGKISSLFRS 128
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 24.2 bits (50), Expect = 7.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 269 TIYTHLWRSQSLSLLTMSGVTN 334
++YTH+WR +SG T+
Sbjct: 1782 SVYTHVWRVSIRDFAEVSGATD 1803
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 24.2 bits (50), Expect = 7.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 177 TLSVHQLVENTDETYCIDNEALYD 248
T S+ ++VEN T+C NE + +
Sbjct: 238 TSSIIEMVENNYRTWCSQNERMVE 261
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.2 bits (50), Expect = 7.2
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 88 VKSTPTES*THTQSSPRPKYQTPSSNPTMRLSQCTNS*KTQTKHTVSITRHSTIFAS 258
V STP + T S+ P TP ++ + + CT S T + + TI +S
Sbjct: 463 VTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSS 519
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 24.2 bits (50), Expect = 7.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 145 YQTPSSNPTMRLSQCTNS*KTQTKHTVSITRHSTI 249
YQ+PSS+ + NS + + + ++RH+T+
Sbjct: 777 YQSPSSDVLLSKPLQLNSSEEMEQQCIDLSRHNTL 811
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/52 (25%), Positives = 29/52 (55%)
Frame = +1
Query: 115 THTQSSPRPKYQTPSSNPTMRLSQCTNS*KTQTKHTVSITRHSTIFASARSN 270
T + S+P + SS+P+ S+ ++S K+ + + S S+ +S++S+
Sbjct: 148 TSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSS 199
Score = 24.2 bits (50), Expect = 7.2
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +1
Query: 85 SVKSTPTES*THTQSSPRPKYQTPSSNPTMRLSQCTNS*KTQTKHTVSITRHSTIFASAR 264
S STP+ S + + SSP + SS+ + S ++S K+ + + S S+ +S++
Sbjct: 149 SSSSTPSSSSSSSSSSPSSS-SSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSK 207
Query: 265 SN 270
S+
Sbjct: 208 SS 209
>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 197
Score = 23.8 bits (49), Expect = 9.6
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 111 MNTY-SVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLST 278
++TY S PK +DT++ ++ T E+ E L D+ R+ LST
Sbjct: 122 LDTYLSKYQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLDDLIQRSDNLST 178
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 23.8 bits (49), Expect = 9.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 242 ECLVIDTVCFVCVFYELV 189
E L +C +CVFY+L+
Sbjct: 101 EILCFRRICLLCVFYKLL 118
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 23.8 bits (49), Expect = 9.6
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = -3
Query: 228 RYSMFRLCFLRVGALRESHC 169
+YS+ R C++ + A+ S+C
Sbjct: 377 KYSLLRTCYIALAAVTVSNC 396
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 23.8 bits (49), Expect = 9.6
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 189 HQLVENTDETYCIDNEALYDICFRTLKLSTPTY--GDLNHLVSSPCLASPTASGSP 350
HQL +++ + N+ L D FR+ L +P+ +L+ + S A+ S +P
Sbjct: 111 HQLTKSSKSLSNVSNKPLGDQLFRSNSLMSPSLLKKELHRIQSDASQANERESQAP 166
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 23.8 bits (49), Expect = 9.6
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 49 PAPVWAHYLSQRSVKSTPTES*THTQSSPRPKYQTPSSNPTMRLSQ 186
PA H LS V ++P S +P TPS NP RL +
Sbjct: 170 PAAANVHVLS---VAASPNPSTPSNGPAPVSTTATPSRNPVTRLQR 212
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 23.8 bits (49), Expect = 9.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 168 YNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYG 290
Y + VH++VE DE D+ F + S PT+G
Sbjct: 537 YLVSDQVHKIVEINDEHADCDDVNFSTASFEIYERSIPTHG 577
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 23.8 bits (49), Expect = 9.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 232 LSIQYVSSVFSTSWC 188
+ IQY SS+ S WC
Sbjct: 360 MGIQYGSSIVSVQWC 374
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,591,967
Number of Sequences: 5004
Number of extensions: 31944
Number of successful extensions: 128
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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