Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H21
         (386 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   3.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   4.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   4.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   4.9  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 210 LCFLRVGALRESHCRVR 160
           + FL V + RES C VR
Sbjct: 6   VAFLPVKSFRESRCSVR 22


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 192 GALRESHC 169
           GA+RESHC
Sbjct: 72  GAIRESHC 79


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 249  ICFRTLKLSTPTYGDLNHLVSSPCLASPTASGSPG 353
            +C  T +L   ++  +    SSP L+  T   +PG
Sbjct: 1466 LCGNTYQLYLTSHNKIGSSPSSPVLSVRTQGQAPG 1500


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 249  ICFRTLKLSTPTYGDLNHLVSSPCLASPTASGSPG 353
            +C  T +L   ++  +    SSP L+  T   +PG
Sbjct: 1462 LCGNTYQLYLTSHNKIGSSPSSPVLSVRTQGQAPG 1496


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 262 RSNYLHPPMEISIT 303
           R NY  PP+E+ +T
Sbjct: 28  RPNYGGPPVEVGVT 41


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 262 RSNYLHPPMEISIT 303
           R NY  PP+E+ +T
Sbjct: 28  RPNYGGPPVEVGVT 41


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 84  IREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVEN 206
           +R      I + + ++ +PKVS+       ATLS  +++ N
Sbjct: 538 VRTPTDSYIRSFFELLQNPKVSNEQFLNTAATLSFCEMIHN 578


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,214
Number of Sequences: 438
Number of extensions: 2401
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)