Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H20
         (599 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061759-1|AAL33802.1| 3270|Homo sapiens nesprin-2 gamma protein.      29   9.4  
AF495911-1|AAN60443.1| 6884|Homo sapiens nesprin-2 protein.            29   9.4  
AF435011-1|AAL33548.1| 6885|Homo sapiens NUANCE protein.               29   9.4  
AB023228-1|BAA76855.3| 3541|Homo sapiens KIAA1011 protein protein.     29   9.4  

>AY061759-1|AAL33802.1| 3270|Homo sapiens nesprin-2 gamma protein.
          Length = 3270

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 13/68 (19%), Positives = 32/68 (47%)
 Frame = -2

Query: 298  LKKNLYAVNTRTDRTADMVRRAAEVISCLSRSGNISEKERFLNRYESKLDESIHKTSSIK 119
            +K+N+   + R  +T +  ++    +SC    G I++ E        K+D  +H+  ++ 
Sbjct: 1269 IKRNIGGKHARLYQTLNEGKQLVASVSCPELEGQIAKLEEQWLSLNKKIDHELHRLQALL 1328

Query: 118  RAIFQTNK 95
            + +   N+
Sbjct: 1329 KHLLSYNR 1336


>AF495911-1|AAN60443.1| 6884|Homo sapiens nesprin-2 protein.
          Length = 6884

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 13/68 (19%), Positives = 32/68 (47%)
 Frame = -2

Query: 298  LKKNLYAVNTRTDRTADMVRRAAEVISCLSRSGNISEKERFLNRYESKLDESIHKTSSIK 119
            +K+N+   + R  +T +  ++    +SC    G I++ E        K+D  +H+  ++ 
Sbjct: 4883 IKRNIGGKHARLYQTLNEGKQLVASVSCPELEGQIAKLEEQWLSLNKKIDHELHRLQALL 4942

Query: 118  RAIFQTNK 95
            + +   N+
Sbjct: 4943 KHLLSYNR 4950


>AF435011-1|AAL33548.1| 6885|Homo sapiens NUANCE protein.
          Length = 6885

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 13/68 (19%), Positives = 32/68 (47%)
 Frame = -2

Query: 298  LKKNLYAVNTRTDRTADMVRRAAEVISCLSRSGNISEKERFLNRYESKLDESIHKTSSIK 119
            +K+N+   + R  +T +  ++    +SC    G I++ E        K+D  +H+  ++ 
Sbjct: 4884 IKRNIGGKHARLYQTLNEGKQLVASVSCPELEGQIAKLEEQWLSLNKKIDHELHRLQALL 4943

Query: 118  RAIFQTNK 95
            + +   N+
Sbjct: 4944 KHLLSYNR 4951


>AB023228-1|BAA76855.3| 3541|Homo sapiens KIAA1011 protein protein.
          Length = 3541

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 13/68 (19%), Positives = 32/68 (47%)
 Frame = -2

Query: 298  LKKNLYAVNTRTDRTADMVRRAAEVISCLSRSGNISEKERFLNRYESKLDESIHKTSSIK 119
            +K+N+   + R  +T +  ++    +SC    G I++ E        K+D  +H+  ++ 
Sbjct: 1518 IKRNIGGKHARLYQTLNEGKQLVASVSCPELEGQIAKLEEQWLSLNKKIDHELHRLQALL 1577

Query: 118  RAIFQTNK 95
            + +   N+
Sbjct: 1578 KHLLSYNR 1585


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,177,173
Number of Sequences: 237096
Number of extensions: 1456573
Number of successful extensions: 2905
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2905
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)