Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H20
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   0.99 
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   1.7  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   3.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   4.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   4.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.0  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   9.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.2  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   9.2  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = -2

Query: 517 NDLQFPDYNNCIFNTIKLNTSPTKKTEKQTHTPYHYNDTTSFITKYTNDFNPLSPFHR-- 344
           +D++  +Y + +F        P     ++  + Y +NDT   I K    + P    HR  
Sbjct: 348 DDIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITIPKEMKIWIPAFAIHRDS 407

Query: 343 MLIPNESTF 317
            + PN  +F
Sbjct: 408 AIYPNPDSF 416


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 262 DRTADMVRRAAEVISCLSRSGNISEKERFLNRYES 158
           DRT     R  ++IS LS + N S    + N Y +
Sbjct: 69  DRTERERSREPKIISSLSNNYNYSNYNNYNNNYNN 103



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 484 YNYCSLGTANHLARDYISEKYYN 552
           YNY +    N+   +Y  + YYN
Sbjct: 89  YNYSNYNNYNNNYNNYNKKLYYN 111


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 416 IRCMSLFFCFFGWRRVKFDCVKDT 487
           I  ++L F +FG   +K DC K++
Sbjct: 10  ILVITLIFLYFGEADIKKDCRKES 33


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 553 NYNIFLKYNHVLNDLQFP 500
           NY ++L YN  ++D++FP
Sbjct: 360 NY-LYLTYNGTVHDVEFP 376


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 398 SRIIVVIRCMSLFFCFFGWRRVKFDCVKDTIIVV 499
           + +I++   +S F      R + F+C+ DTI ++
Sbjct: 101 ANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLI 134


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 398 SRIIVVIRCMSLFFCFFGWRRVKFDCVKDTIIVV 499
           + +I++   +S F      R + F+C+ DTI ++
Sbjct: 101 ANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLI 134


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/63 (20%), Positives = 27/63 (42%)
 Frame = -2

Query: 262 DRTADMVRRAAEVISCLSRSGNISEKERFLNRYESKLDESIHKTSSIKRAIFQTNKYRFL 83
           DRT     +  ++IS LS +   S    + N Y +  + + +  ++ K+  +  N    +
Sbjct: 302 DRTERERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQI 361

Query: 82  DYP 74
             P
Sbjct: 362 PVP 364


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 398 SRIIVVIRCMSLFFCFFGWRRVKFDCVKDTIIVV 499
           + +I++   +S F      R + F+C+ DTI ++
Sbjct: 101 ANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLI 134


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = -2

Query: 262 DRTADMVRRAAEVISCLSRSGNISEKERFLNRYESKLDES 143
           DRT     +  ++IS LS +   S    + N Y +  + +
Sbjct: 69  DRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNN 108


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = -2

Query: 262 DRTADMVRRAAEVISCLSRSGNISEKERFLNRYESKLDES 143
           DRT     +  ++IS LS +   S    + N Y +  + +
Sbjct: 69  DRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNN 108


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 442 TEKQTHTPYHYNDTTSF 392
           T +Q+H  YH+ D+  +
Sbjct: 156 TPRQSHQSYHHMDSVEY 172


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 364 PLSPFHRMLIPNESTF 317
           PL+PF R + PN   F
Sbjct: 150 PLTPFPRFIPPNAYRF 165


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 364 PLSPFHRMLIPNESTF 317
           PL+PF R + PN   F
Sbjct: 391 PLTPFPRFIPPNAYRF 406


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 429 LIHLITTMIRLALL 388
           L+H++TT I L LL
Sbjct: 129 LLHMLTTTITLTLL 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,637
Number of Sequences: 438
Number of extensions: 4335
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)