Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H19
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    35   0.011
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.53 
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    28   1.2  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.1  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   2.8  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    27   2.8  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    26   3.7  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   3.7  
SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase |S...    26   4.9  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   4.9  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   6.5  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   6.5  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 243  PVESHHPVNSRRPVNSRRPVNSRRPVNSRQYVNSRRPVNS 124
            P+ S   VNS  P+ S   VN+  P+ S   VNS  P+ S
Sbjct: 1655 PITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITS 1694



 Score = 34.7 bits (76), Expect = 0.011
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 243  PVESHHPVNSRRPVNSRRPVNSRRPVNSRQYVNSRRPVNS 124
            P+ S   VN+  P+ S   VNS  P+ S   VNS  P+ S
Sbjct: 1715 PITSSTVVNTSTPITSSTVVNSSTPITSSTVVNSSTPITS 1754



 Score = 34.7 bits (76), Expect = 0.011
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 243  PVESHHPVNSRRPVNSRRPVNSRRPVNSRQYVNSRRPVNS 124
            P+ S   VNS  P+ S   VN+  P+ S   VNS  P+ S
Sbjct: 2267 PITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITS 2306



 Score = 33.9 bits (74), Expect = 0.019
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 243  PVESHHPVNSRRPVNSRRPVNSRRPVNSRQYVNSRRPVNS 124
            P+ S   VNS  P+ S   +N+  P+ S   VNS  P+ S
Sbjct: 3407 PITSSTVVNSSTPITSSTALNTSTPITSSTVVNSSTPITS 3446



 Score = 33.1 bits (72), Expect = 0.032
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 243  PVESHHPVNSRRPVNSRRPVNSRRPVNSRQYVNSRRPVNS 124
            P+ S   VNS  P+ S   VNS  P+ S   +N+  P+ S
Sbjct: 1727 PITSSTVVNSSTPITSSTVVNSSTPITSSTALNTSTPITS 1766



 Score = 29.5 bits (63), Expect = 0.40
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 240  VESHHPVNSRRPVNSRRPVNSRRPVNSRQYVNSRRPVNSRRPM 112
            + S  P+ S   VN+  P+ S   VNS   + S   VNS  P+
Sbjct: 1710 LNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVVNSSTPI 1752



 Score = 29.5 bits (63), Expect = 0.40
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 240  VESHHPVNSRRPVNSRRPVNSRRPVNSRQYVNSRRPVNSRRPM 112
            V +  P+ S   VNS  P+ S   VN+   + S   VNS  P+
Sbjct: 2262 VNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPI 2304



 Score = 28.7 bits (61), Expect = 0.70
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 225  PVNSRRPVNSRRPVNSRRPVNSRQYVNSRRPVNSRRPM 112
            P+ S   VNS  P+ S   VN+   + S   VNS  P+
Sbjct: 1655 PITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPI 1692



 Score = 28.7 bits (61), Expect = 0.70
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 240  VESHHPVNSRRPVNSRRPVNSRRPVNSRQYVNSRRPVNSRRPM 112
            V +  P+ S   VNS  P+ S   VNS   + S   +N+  P+
Sbjct: 1722 VNTSTPITSSTVVNSSTPITSSTVVNSSTPITSSTALNTSTPI 1764



 Score = 28.7 bits (61), Expect = 0.70
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 240  VESHHPVNSRRPVNSRRPVNSRRPVNSRQYVNSRRPVNSRRPM 112
            + S  P+ S   VNS  P+ S   +N+   + S   VNS  P+
Sbjct: 3402 LNSSTPITSSTVVNSSTPITSSTALNTSTPITSSTVVNSSTPI 3444


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 252 PLLPVES---HHPVNSRRPVNSRRPVNSRRPVNSRQYVNSRRPVNSRRPMEP 106
           P+ PV+S   + P +  +PV +  P    +PV S QY     PV   + ++P
Sbjct: 392 PIQPVQSTQYYQPSSPVQPVQNGVPAPPMQPVQSTQYYQPSSPVQPVQNVKP 443


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 232 ASPRELTPPRELTSPRELASPCELTPIRELTSPRELTSP 116
           ++PR +  P++ TSP ++ S CE  P   LT  +  + P
Sbjct: 119 SNPRYVAVPQKSTSPNQVCSYCEPLP-NHLTKTKSCSIP 156


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 252 PLLPVESHHPVNSRRPVNSRRPVNSRRP-VNSRQYVNSR 139
           PLLP E +       P +SRR V+S +P + S  ++N R
Sbjct: 153 PLLPREGNSSDEYLPPQSSRRDVSSEKPSIPSISFINIR 191


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +2

Query: 116 GRREFTGRREFTYWREFTGRREF---TGRREFTGRRE 217
           G R F GR+  ++W EF   RE+     RREF    E
Sbjct: 348 GVRWFRGRKSESFWDEFDDDREWDVDERRREFPNASE 384


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 403 VIPKCSN*IYIEGDYRNI 456
           ++P CSN +Y EGDY  +
Sbjct: 340 MVPVCSNPVYQEGDYSEL 357


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 261 FSCPLLPVESHHPVNSRRPVNSRRPVNSRRPVN 163
           FS P   ++SH P+N    V+  RP +   P++
Sbjct: 127 FSPPASKIQSHEPLNDMAAVHPLRPSHVSGPLS 159


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = -1

Query: 210 RPVNSRRPVNSRRPVNSRQYVNSRRPVNSRRPMEPR*NNSQCRSSLTIIKR 58
           R   SRR   SRRP  SR    SRRP  S        N+ + +  +   KR
Sbjct: 194 RDHRSRRRSRSRRPGRSRSRRRSRRPSPSAEHNSAEENDPELQRVIEESKR 244


>SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 223 RELTPPRELTSPRELASPCELTPIR 149
           R+L  P E+TSPRE   P  + P+R
Sbjct: 108 RQLANP-EVTSPREFNRPGHIVPLR 131


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 18/34 (52%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 218 THAAP*THVAP*TRVAL*T-HANT*THVAP*THV 120
           T A P THV   T V   T H NT T V P THV
Sbjct: 107 TTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTHV 140



 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = -2

Query: 218 THAAP*THVAP*TRVAL*THANT*THVAP*TH 123
           T   P THV   T V   TH NT T V P TH
Sbjct: 120 TVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTH 151


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 13  NRTCVKLGDYYCLYLP 60
           NR CV LGDY   YLP
Sbjct: 356 NRQCVWLGDYGDQYLP 371


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 189 PVNSRRPVNSRQYVNSRRPVNSRRPMEP 106
           PVN+ RP+  +Q  NS   + S  P  P
Sbjct: 455 PVNASRPMMPQQSNNSEASIPSTTPQSP 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,137
Number of Sequences: 5004
Number of extensions: 38746
Number of successful extensions: 100
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)