Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H19
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28...    33   0.13 
11_06_0676 + 26152192-26152367,26152669-26152708,26152857-261529...    32   0.41 
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611...    30   1.6  

>05_01_0041 +
           281427-281549,281671-281730,281822-281868,282013-282089,
           285368-285440,286193-286281,286665-286711,286805-286885,
           287011-287179,287381-287600,287679-287744,288194-288310,
           288591-288628,288935-289032
          Length = 434

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = -3

Query: 241 RGIASPRELTPPRELTSPRELASPCELTPIRELTSPRELTSP 116
           R + SPR L+P R+  SP    SP    P R LT PR + SP
Sbjct: 322 RRLRSPRHLSPRRDRGSPIRRRSP---LPRRRLTPPRRMWSP 360


>11_06_0676 +
           26152192-26152367,26152669-26152708,26152857-26152966,
           26153886-26153934,26154157-26154206,26154606-26155150,
           26155583-26155743,26156231-26156440,26156525-26156690,
           26156765-26156869,26157465-26157760
          Length = 635

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 440 PSM*IQFEHFGITHLNINYYHYTPQAIPLHNNNFG 336
           P + + F+  GI    I + H  PQA P +NN+FG
Sbjct: 495 PDLHVTFQVQGIAGAEIYHAHELPQAFPNNNNDFG 529


>02_02_0015 +
           6109552-6109650,6110006-6110078,6111937-6111998,
           6112315-6112376,6112463-6112556,6112673-6113227,
           6113379-6113870,6113967-6114137,6115713-6115817,
           6115903-6116052,6116372-6116498,6116585-6116648,
           6117147-6117203,6117423-6117555,6117660-6117746
          Length = 776

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 247 IARGIASPRELTPPRELTSPRELASPCELTPIR 149
           +AR I  PR + PPR +  PR +  P  + P R
Sbjct: 269 VARTIDPPRPIDPPRPIDPPRPIDPPRPIDPPR 301



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 222 VNSRRPVNSRRPVNSRRPVNSRQYVNSRRPVNSRRPMEP 106
           ++  RP++  RP++  RP++  + ++  RP N  R +EP
Sbjct: 273 IDPPRPIDPPRPIDPPRPIDPPRPIDPPRP-NGTRTIEP 310



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -1

Query: 258 SCPLLPVESHHPVNSRRPVNSRRPVNSRRPVNSRQYVNSRRPVNSRRP 115
           + P L V      N  R ++  RP++  RP++  + ++  RP++  RP
Sbjct: 255 NAPQLRVGEPPKPNVARTIDPPRPIDPPRPIDPPRPIDPPRPIDPPRP 302



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 252 PLLPVESHHPVNSRRPVNSRRPVNSRRPVNSR 157
           P  P++   P++  RP++  RP++  RP  +R
Sbjct: 275 PPRPIDPPRPIDPPRPIDPPRPIDPPRPNGTR 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,858,325
Number of Sequences: 37544
Number of extensions: 232528
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)