Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H19
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82268-9|CAD89738.1|  509|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z79759-2|CAB02137.1|  255|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL023835-17|CAD89760.1|  509|Caenorhabditis elegans Hypothetical...    29   2.6  
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical...    29   2.6  
Z81545-4|CAB04439.1|  352|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z82268-9|CAD89738.1|  509|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1b protein.
          Length = 509

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 253 SLIARGIASPRELTPPRELTSPRELASP-CELTPIRELTSPRE 128
           S + R  A+ R   PPR  + PR  +SP  +  P RE+   RE
Sbjct: 216 SPLHRSSAARRHSPPPRRASPPRRTSSPKRDARPAREIRDSRE 258



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 241 RGIASP-RELTPPRELTSPRELASPCELTPIRELTSPRELTSP 116
           R  +SP R+  P RE+   RE        P R   SPR+ +SP
Sbjct: 238 RRTSSPKRDARPAREIRDSREPREVRRSPPPRRAASPRKASSP 280


>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1a protein.
          Length = 1222

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 253 SLIARGIASPRELTPPRELTSPRELASP-CELTPIRELTSPRE 128
           S + R  A+ R   PPR  + PR  +SP  +  P RE+   RE
Sbjct: 216 SPLHRSSAARRHSPPPRRASPPRRTSSPKRDARPAREIRDSRE 258



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 241 RGIASP-RELTPPRELTSPRELASPCELTPIRELTSPRELTSP 116
           R  +SP R+  P RE+   RE        P R   SPR+ +SP
Sbjct: 238 RRTSSPKRDARPAREIRDSREPREVRRSPPPRRAASPRKASSP 280


>Z79759-2|CAB02137.1|  255|Caenorhabditis elegans Hypothetical
           protein ZK858.2 protein.
          Length = 255

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 8/55 (14%)
 Frame = -3

Query: 256 LSLIARG-IASPRELTPPREL-TSPRELA-----SPCELTPIREL-TSPRELTSP 116
           +SL+A   +A  R L  PR++ +SP E+A     SP +  PIREL T+P  +++P
Sbjct: 15  MSLLATPPVAIRRPLPYPRDIISSPLEVATPVTVSPTDFMPIRELVTTPYHISTP 69



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 229 SPRELTPPREL-TSPRELASPCELTPIRELTSPREL 125
           SP +  P REL T+P  +++P  +TP+   +  RE+
Sbjct: 49  SPTDFMPIRELVTTPYHISTPVLITPVDARSISREI 84


>AL023835-17|CAD89760.1|  509|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1b protein.
          Length = 509

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 253 SLIARGIASPRELTPPRELTSPRELASP-CELTPIRELTSPRE 128
           S + R  A+ R   PPR  + PR  +SP  +  P RE+   RE
Sbjct: 216 SPLHRSSAARRHSPPPRRASPPRRTSSPKRDARPAREIRDSRE 258



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 241 RGIASP-RELTPPRELTSPRELASPCELTPIRELTSPRELTSP 116
           R  +SP R+  P RE+   RE        P R   SPR+ +SP
Sbjct: 238 RRTSSPKRDARPAREIRDSREPREVRRSPPPRRAASPRKASSP 280


>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
           protein Y37A1B.1a protein.
          Length = 1222

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 253 SLIARGIASPRELTPPRELTSPRELASP-CELTPIRELTSPRE 128
           S + R  A+ R   PPR  + PR  +SP  +  P RE+   RE
Sbjct: 216 SPLHRSSAARRHSPPPRRASPPRRTSSPKRDARPAREIRDSRE 258



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 241 RGIASP-RELTPPRELTSPRELASPCELTPIRELTSPRELTSP 116
           R  +SP R+  P RE+   RE        P R   SPR+ +SP
Sbjct: 238 RRTSSPKRDARPAREIRDSREPREVRRSPPPRRAASPRKASSP 280


>Z81545-4|CAB04439.1|  352|Caenorhabditis elegans Hypothetical
           protein F49H6.4 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 510 AAHLHAFTRIICPTK*YLNIPV 445
           AA LHA TR  CPT  +   PV
Sbjct: 175 AAKLHALTRYPCPTTEFFEFPV 196


>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
           protein B0379.3b protein.
          Length = 1050

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -1

Query: 252 PLLPVESHHPVNSRRPVNSRRPVNSRRPVNSRQYVNSRRPVNSRRPMEPR*NNSQ 88
           P  P ++H P+        R P+   RP ++  ++N R P     P  P  N SQ
Sbjct: 659 PFTPADTHKPIKVAPKEPVRNPLLKERP-SANGFINRRLP---SHPAPPPVNQSQ 709


>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
           protein B0379.3a protein.
          Length = 1054

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -1

Query: 252 PLLPVESHHPVNSRRPVNSRRPVNSRRPVNSRQYVNSRRPVNSRRPMEPR*NNSQ 88
           P  P ++H P+        R P+   RP ++  ++N R P     P  P  N SQ
Sbjct: 663 PFTPADTHKPIKVAPKEPVRNPLLKERP-SANGFINRRLP---SHPAPPPVNQSQ 713


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,501,498
Number of Sequences: 27780
Number of extensions: 217514
Number of successful extensions: 536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)