Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H18
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0342 + 16963528-16963598,16963668-16964235,16964350-169647...    28   5.1  
05_01_0260 - 1993075-1994312,1996249-1997191                           28   5.1  

>07_03_0342 +
           16963528-16963598,16963668-16964235,16964350-16964760,
           16964848-16965051,16968663-16969032,16972466-16972601,
           16972680-16972779,16972933-16973190,16973276-16973314,
           16973420-16973458
          Length = 731

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 49  QDQAFYKTVEMYQFEANDLITKMIEEKNHAGGQNVYGAN 165
           +DQ  Y+ +   Q   +DL+TK +  K H G     G++
Sbjct: 205 EDQRVYEAIAYSQRREDDLLTKALGNKEHRGRTRGVGSS 243


>05_01_0260 - 1993075-1994312,1996249-1997191
          Length = 726

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 13  DRVVTTLIRDVDQDQAFY-KTVEMYQFEANDLITKMIEEKNHAGGQNVYGA 162
           DR      R + + Q F   T+  YQF  NDL++      +  GG  + GA
Sbjct: 208 DRTTPRSYRVLSRAQVFILPTINSYQFNTNDLVSSSWMNTSSIGGTLLRGA 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,946,737
Number of Sequences: 37544
Number of extensions: 166822
Number of successful extensions: 271
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)