Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_H17
(341 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 33 0.012
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 29 0.20
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 29 0.26
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 27 0.80
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 27 0.80
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S... 25 2.4
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 3.2
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb... 25 4.3
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 7.5
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 24 7.5
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 24 7.5
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 24 7.5
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 24 7.5
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 24 7.5
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 23 9.8
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 23 9.8
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 23 9.8
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 23 9.8
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 23 9.8
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 23 9.8
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 23 9.8
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 33.1 bits (72), Expect = 0.012
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +3
Query: 84 RKPATVIVNQALMASIVTGAGRIITVSQWKAARIATAMSGDRQTTSATCLDNVPARKTSR 263
++ +V+ ++ + VT +S AA+ A +GD +TTS+ PA +S
Sbjct: 30 KRDVSVVTSKVYAYTTVTLEAAASAISTNGAAKEAATAAGDAETTSSVAASVTPAASSSV 89
Query: 264 AGDVTDV 284
A VT V
Sbjct: 90 AASVTPV 96
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 29.1 bits (62), Expect = 0.20
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 122 HQCLVYNNSGRFADGMSYCTIPPSYNRKLCNR 27
HQ NNS F DG Y PPS+ +L +
Sbjct: 284 HQLAASNNSQDFEDGKQYDQPPPSFATRLAKQ 315
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 28.7 bits (61), Expect = 0.26
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 333 GQSSHPCPSSRRFVFSIHLSHRLPSTFSWQEHCPDM 226
G + HP P ++ + L + + +WQ CP+M
Sbjct: 186 GSACHPIPGAKTAAEAKQLEYDIEKFTTWQYRCPEM 221
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 27.1 bits (57), Expect = 0.80
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +2
Query: 83 PQTGHCYCKPGIDGIHCDRCRAYHYGFSVEGCKDC 187
P C+ P G HC RC+A +E C C
Sbjct: 295 PSLCACHSIPSRGGFHCPRCKAKVCTLPIE-CPSC 328
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 27.1 bits (57), Expect = 0.80
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 35 KACDCNLEGSYNSSCHPQTGHCYCK-PGIDGIHCDRCRAYHYGFSVEG 175
K DC EG+YNS HP G + + P + + +R + F+ +G
Sbjct: 466 KLVDCE-EGNYNSHGHPPRGEIWLRGPSLTRGYLNRDKENKESFTPDG 512
>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 2.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 297 FVFSIHLSHRLPSTFSWQEHCPD 229
F S+ L +LPST W++H D
Sbjct: 274 FSMSVRLIVKLPSTAVWRDHTVD 296
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 3.2
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = -1
Query: 221 TGSLSIPTHRSRNPCSLPLRNRNDTPGTGHNGCHQCLVYNNSGRFADGMSYCTIPPSYNR 42
TGS++ + + C+LP+ + T +G ++ S DG C I +
Sbjct: 759 TGSVTTTSTTATASCTLPISYTSTPTTTSISGTCNGATFDASLYVCDGTVLCPIVNGVSY 818
Query: 41 KLCN 30
+ CN
Sbjct: 819 QNCN 822
>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 377
Score = 24.6 bits (51), Expect = 4.3
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -3
Query: 327 SSHPCPSSRRFV---FSIHLSHRLPSTFSWQEHCPDM 226
+SHP S+ R + ++ L+ R SW E CP M
Sbjct: 305 NSHPINSNARILRMKVNLPLTERGGLGVSWDEECPPM 341
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 23.8 bits (49), Expect = 7.5
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 328 IVASLSVKPTLCI 290
++ASL VKPTLC+
Sbjct: 414 LLASLLVKPTLCL 426
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 23.8 bits (49), Expect = 7.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 250 LAGTLSRHVALVVCRSPL 197
+A TL+ ++A+V CR PL
Sbjct: 1186 MAKTLAGNLAMVTCREPL 1203
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 23.8 bits (49), Expect = 7.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 167 VEGCKDCDCDEWGSTNYQCD 226
+E CK C E G +N CD
Sbjct: 126 IEQCKICGVPESGLSNVYCD 145
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 23.8 bits (49), Expect = 7.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 161 NRNDTPGTGHNGCHQCLVYNNSGR 90
N +DT G +G L+ NN+GR
Sbjct: 616 NEDDTSQKGEDGVPGVLIGNNTGR 639
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 23.8 bits (49), Expect = 7.5
Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Frame = +2
Query: 233 GQCS-CQENVEGRRCDRC 283
G CS CQ+N RC RC
Sbjct: 7 GICSTCQKNASKYRCPRC 24
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 23.8 bits (49), Expect = 7.5
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +2
Query: 47 CNLEGSYNSSCHPQTGHCYCKPGIDGIHCD-RC 142
CN+ G + G YC G + IH + RC
Sbjct: 102 CNVCGYWGKYACQNCGTSYCSKGCEVIHSETRC 134
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 23.4 bits (48), Expect = 9.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 114 ALMASIVTGAGRIITVSQWKAA 179
A+ I TG+G+ + + QW AA
Sbjct: 380 AVRFDINTGSGQYMPIDQWNAA 401
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 23.4 bits (48), Expect = 9.8
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -1
Query: 146 PGTGHNGCHQCLVYNNSGRFAD--GMSYCTIPPSYN-RKLCNRLLSR 15
PG GHN +V GR D G+ Y + Y+ + R+ SR
Sbjct: 89 PGIGHNAQEHAVVLLRGGRAQDCPGVQYHVVRGVYDIAGVAGRVTSR 135
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 23.4 bits (48), Expect = 9.8
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 2 HEDNIDSGDGCKACDCNLEGSYNSSCH-PQTGHCY 103
HE+NID D + C C +N S + QT Y
Sbjct: 224 HENNIDQSDSPQHCYC-CGNKFNESYYQSQTAQKY 257
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 23.4 bits (48), Expect = 9.8
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +3
Query: 87 KPATVIVNQALMASIVTGAGRIITVSQWKAARIATAMSGDRQTTSAT 227
+P+TV+ S+ T A TVS +A +T S S T
Sbjct: 1454 EPSTVVTTSYYTTSVYTSAPATETVSSTEAPESSTVTSNPIYQGSGT 1500
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 23.4 bits (48), Expect = 9.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 200 WGSTNYQCDMSGQCSCQENVEGRRCDRCMENTK 298
W N+ GQ C GRRCD C ++K
Sbjct: 195 WFELNHTLVGFGQTICLPR--GRRCDMCTLSSK 225
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 164 SVEGCKDCDCDEWGSTNYQCDMSGQCSCQ 250
S+EG DC E+ N+ C++ SC+
Sbjct: 824 SLEGYNDCS--EFTGVNFTCEVDWHESCK 850
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 23.4 bits (48), Expect = 9.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 123 PSMPGLQ*QWPVCGWHELLYDPSKLQSQALQPSPESILSS 4
P+MP + +PV G+ + +PS Q ++ PSP +S
Sbjct: 593 PTMPYIPVGYPVPGYTPYMRNPS--QHTSVAPSPNGTPTS 630
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,573,276
Number of Sequences: 5004
Number of extensions: 32662
Number of successful extensions: 95
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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