Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_H16
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 147 3e-36
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 136 7e-33
04_04_1362 + 32897581-32897925,32897979-32897984 30 0.54
03_01_0427 + 3296717-3296861,3296966-3297210 28 2.9
12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077 27 3.8
11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989 27 3.8
08_02_0628 + 19459198-19459674,19459751-19459894,19460191-194604... 27 5.0
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733 27 5.0
02_05_0625 + 30453521-30453890,30454215-30454352,30454458-304547... 27 5.0
02_05_0133 - 26117998-26118243,26118320-26119592,26120773-26121080 27 6.6
01_01_0714 - 5539961-5540401 27 6.6
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 26 8.7
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 147 bits (356), Expect = 3e-36
Identities = 72/110 (65%), Positives = 84/110 (76%), Gaps = 1/110 (0%)
Frame = +2
Query: 56 DNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVG 235
+NP KS KA G +LRVHFKNT ETA AIRKLPL +A RYL++V K+ IPFRR+ GGVG
Sbjct: 9 NNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVG 68
Query: 236 RCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI 382
R AQAK + QGRWP KSA F+L LL+NAESNA+ KGLDVD L + HI
Sbjct: 69 RTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHI 118
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 136 bits (328), Expect = 7e-33
Identities = 73/129 (56%), Positives = 85/129 (65%), Gaps = 13/129 (10%)
Frame = +2
Query: 35 GSLLSGPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKLPLRRAVRYLK 178
G + P NP KS KA G +LRVHFK NT ETA A+RKLPL +A RYL+
Sbjct: 2 GKYSTEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYLE 61
Query: 179 NVTEKKECIPFRRFNGGVGRCAQAKQFGTT-QGRWPKKSAEFLLQLLRNAESNADYKGLD 355
+V K+ IPFRR+ GGVGR AQ K + QGRWP KSA F+L LL+NAESNAD KGLD
Sbjct: 62 DVIAHKQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKNAESNADVKGLD 121
Query: 356 VDRLVIDHI 382
VD L + HI
Sbjct: 122 VDNLFVSHI 130
>04_04_1362 + 32897581-32897925,32897979-32897984
Length = 116
Score = 30.3 bits (65), Expect = 0.54
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 318 LKSWSRNSADFLGQRPCVVPNCLACAQRPTPPLKRRKGMH 199
L++W R SA + RP + ACA+ P +R +G +
Sbjct: 14 LRAWIRRSATAVALRPLLTGVAAACAEAIASPARRGRGRY 53
>03_01_0427 + 3296717-3296861,3296966-3297210
Length = 129
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 273 PCVVPNCLACAQRPTPPLKRRKGM 202
PCV+PNC A A R P L + M
Sbjct: 92 PCVIPNCKASAARLCPLLLSQSHM 115
>12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077
Length = 371
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 85 WLKPSCSLQEHL*NCHGYKKTASSPCCPLP 174
W++ SCS+ E L +C G K T C P
Sbjct: 81 WVEHSCSVPELLDSCRGSKDTKREQECGRP 110
>11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989
Length = 371
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 85 WLKPSCSLQEHL*NCHGYKKTASSPCCPLP 174
W++ SCS+ E L +C G K T C P
Sbjct: 81 WVEHSCSVPELLDSCRGSKDTKREQECGRP 110
>08_02_0628 +
19459198-19459674,19459751-19459894,19460191-19460431,
19460616-19461116,19461226-19461635
Length = 590
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 160 CCPLPKECDRKEGMHSLPSF*RWSWPLCT 246
CCP P + G HS S +SWP T
Sbjct: 32 CCPSPLQPIASGGQHSESSAAYFSWPTST 60
>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
Length = 760
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 5 RGFLLGEIKNGSLLSGPDNPAKSCKARGSNLRVHFKNTYET 127
+G L EI +G G + +K CK + N+ +FK E+
Sbjct: 517 KGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYFKKVKES 557
>02_05_0625 +
30453521-30453890,30454215-30454352,30454458-30454727,
30454844-30454983,30455067-30455213,30455319-30456008
Length = 584
Score = 27.1 bits (57), Expect = 5.0
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = -1
Query: 382 NMINHEPVNV*TFVVSI*FSIPQKLEQEFCRFLGPTTLCGTKLFSLCTTANSTVKTTEGN 203
++ NH + T VV FSI L + R LG T G F+L + S+ GN
Sbjct: 103 DLANHAVWAILTVVVVFEFSIGATLSKGLNRGLGTLTAGG---FALAVSELSSSMGNFGN 159
Query: 202 AFLLFC 185
L+ C
Sbjct: 160 VILIIC 165
>02_05_0133 - 26117998-26118243,26118320-26119592,26120773-26121080
Length = 608
Score = 26.6 bits (56), Expect = 6.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 5 RGFLLGEIKNGSLLSGPDNPAKSCKARGSNLRVHFKNTYET 127
+G L EI G G + AK CK + N+ +FK E+
Sbjct: 401 KGPLWEEIAAGMQRIGYNRSAKRCKEKWENINKYFKKVKES 441
>01_01_0714 - 5539961-5540401
Length = 146
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 128 AMAIRKLPL-RRAVRYLKNVTEKKECIPFRRFNGGVGRCAQ 247
A+ K+P +R Y +N +K P+RR + RCA+
Sbjct: 103 ALDANKVPCNKRGQSYYQNCASQKAANPYRRGCSAITRCAR 143
>10_08_0267 - 16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 20 GEIKNGSLLSGPDNPAKSCKARGSNLR 100
G K + LSGPD+ K C A G R
Sbjct: 997 GTTKTPAWLSGPDSRGKLCNACGKQYR 1023
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,514,661
Number of Sequences: 37544
Number of extensions: 245270
Number of successful extensions: 634
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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