Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H16
         (382 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060845-1|AAL28393.1|  186|Drosophila melanogaster GM02242p pro...   195   1e-50
AE014298-945|AAN09183.1|  186|Drosophila melanogaster CG3203-PD,...   195   1e-50
AE014298-944|AAF46194.1|  186|Drosophila melanogaster CG3203-PC,...   195   1e-50
AE014298-943|AAN09182.1|  186|Drosophila melanogaster CG3203-PB,...   195   1e-50
AE014298-942|AAF46195.1|  186|Drosophila melanogaster CG3203-PA,...   195   1e-50
AF521598-1|AAN62854.1|  400|Drosophila melanogaster MSP-300/nesp...    29   2.7  
AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-P...    29   2.7  

>AY060845-1|AAL28393.1|  186|Drosophila melanogaster GM02242p
           protein.
          Length = 186

 Score =  195 bits (476), Expect = 1e-50
 Identities = 89/109 (81%), Positives = 99/109 (90%)
 Frame = +2

Query: 56  DNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVG 235
           DN AKSCKARG NLRVHFKNT+ETA AI+++PLRRA RYLK V ++KEC+PFRRFNGGVG
Sbjct: 9   DNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVG 68

Query: 236 RCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI 382
           RCAQAKQ+ TTQGRWPKKSAEFLLQLLRNAE+NAD KGLD DRLV+ HI
Sbjct: 69  RCAQAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHI 117


>AE014298-945|AAN09183.1|  186|Drosophila melanogaster CG3203-PD,
           isoform D protein.
          Length = 186

 Score =  195 bits (476), Expect = 1e-50
 Identities = 89/109 (81%), Positives = 99/109 (90%)
 Frame = +2

Query: 56  DNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVG 235
           DN AKSCKARG NLRVHFKNT+ETA AI+++PLRRA RYLK V ++KEC+PFRRFNGGVG
Sbjct: 9   DNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVG 68

Query: 236 RCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI 382
           RCAQAKQ+ TTQGRWPKKSAEFLLQLLRNAE+NAD KGLD DRLV+ HI
Sbjct: 69  RCAQAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHI 117


>AE014298-944|AAF46194.1|  186|Drosophila melanogaster CG3203-PC,
           isoform C protein.
          Length = 186

 Score =  195 bits (476), Expect = 1e-50
 Identities = 89/109 (81%), Positives = 99/109 (90%)
 Frame = +2

Query: 56  DNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVG 235
           DN AKSCKARG NLRVHFKNT+ETA AI+++PLRRA RYLK V ++KEC+PFRRFNGGVG
Sbjct: 9   DNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVG 68

Query: 236 RCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI 382
           RCAQAKQ+ TTQGRWPKKSAEFLLQLLRNAE+NAD KGLD DRLV+ HI
Sbjct: 69  RCAQAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHI 117


>AE014298-943|AAN09182.1|  186|Drosophila melanogaster CG3203-PB,
           isoform B protein.
          Length = 186

 Score =  195 bits (476), Expect = 1e-50
 Identities = 89/109 (81%), Positives = 99/109 (90%)
 Frame = +2

Query: 56  DNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVG 235
           DN AKSCKARG NLRVHFKNT+ETA AI+++PLRRA RYLK V ++KEC+PFRRFNGGVG
Sbjct: 9   DNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVG 68

Query: 236 RCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI 382
           RCAQAKQ+ TTQGRWPKKSAEFLLQLLRNAE+NAD KGLD DRLV+ HI
Sbjct: 69  RCAQAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHI 117


>AE014298-942|AAF46195.1|  186|Drosophila melanogaster CG3203-PA,
           isoform A protein.
          Length = 186

 Score =  195 bits (476), Expect = 1e-50
 Identities = 89/109 (81%), Positives = 99/109 (90%)
 Frame = +2

Query: 56  DNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVG 235
           DN AKSCKARG NLRVHFKNT+ETA AI+++PLRRA RYLK V ++KEC+PFRRFNGGVG
Sbjct: 9   DNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVG 68

Query: 236 RCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHI 382
           RCAQAKQ+ TTQGRWPKKSAEFLLQLLRNAE+NAD KGLD DRLV+ HI
Sbjct: 69  RCAQAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHI 117


>AF521598-1|AAN62854.1|  400|Drosophila melanogaster MSP-300/nesprin
           splice variant protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 21/68 (30%), Positives = 27/68 (39%)
 Frame = +2

Query: 47  SGPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNG 226
           S  D      K   SNL VH ++  E     +KLP   A   L N T  +  +  RR   
Sbjct: 274 SSLDGMLHGLKLIQSNLEVHERDAIELKNQAKKLPTDPATERLLNDTVDRIDLLLRRTQQ 333

Query: 227 GVGRCAQA 250
           G+   A A
Sbjct: 334 GITMIANA 341


>AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-PD,
            isoform D protein.
          Length = 11707

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 21/68 (30%), Positives = 27/68 (39%)
 Frame = +2

Query: 47   SGPDNPAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNG 226
            S  D      K   SNL VH ++  E     +KLP   A   L N T  +  +  RR   
Sbjct: 7735 SSLDGMLHGLKLIQSNLEVHERDAIELKNQAKKLPTDPATERLLNDTVDRIDLLLRRTQQ 7794

Query: 227  GVGRCAQA 250
            G+   A A
Sbjct: 7795 GITMIANA 7802


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,916,535
Number of Sequences: 53049
Number of extensions: 404506
Number of successful extensions: 1014
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1024276155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)