Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_H15
(475 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0600 + 18883094-18883393,18883606-18883755,18883851-188841... 31 0.36
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969... 31 0.47
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 30 0.83
03_05_0530 - 25306788-25306919,25307446-25308037,25308152-253089... 30 0.83
11_01_0051 + 391254-391343,391460-391862,392345-392352,393627-39... 30 1.1
12_01_0052 + 433203-433292,433409-433815,434435-434447,437081-43... 29 1.4
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 29 1.4
03_01_0574 + 4243019-4244284 29 2.5
08_01_0989 - 10019898-10020057,10020157-10020314 28 3.3
02_01_0112 - 839048-839552,839638-839720,839828-839982,840078-84... 28 4.4
04_01_0255 - 3395548-3396129,3396203-3397834 27 7.7
02_01_0355 + 2558792-2558862,2558993-2559099,2559185-2559615,256... 27 7.7
01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361... 27 7.7
>09_04_0600 +
18883094-18883393,18883606-18883755,18883851-18884142,
18884697-18884858,18884958-18885021,18887573-18888080
Length = 491
Score = 31.5 bits (68), Expect = 0.36
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +2
Query: 266 GLVRSRSVV--AHSQQMALPAETHPGPVRGSRRRCPPFHADAQANQNPTARFEIH*LQAR 439
G VR+ + AH++ +A+PA G +R RR P ADA A+ R E H R
Sbjct: 34 GAVRAAAACGEAHARGVAMPAGGGLGGLRRRRRSAPRRDADADADAQSKMRTEKH--GGR 91
Query: 440 LLYRHV 457
RHV
Sbjct: 92 RRRRHV 97
>01_06_1202 +
35396165-35396260,35396398-35396549,35396694-35396938,
35397044-35398350
Length = 599
Score = 31.1 bits (67), Expect = 0.47
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +3
Query: 126 VVGDGSWNLTIYVTDLSEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHALWWPTRN 305
VV +N+TI+ + + RT G + +K S+ F + + LWW +
Sbjct: 71 VVNHAQYNVTIHWHGIRQFRTGWADGPEFVTQCPIKPGGSYKYRFTIEGQEGTLWWHAHS 130
Query: 306 KWL 314
WL
Sbjct: 131 SWL 133
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 30.3 bits (65), Expect = 0.83
Identities = 18/70 (25%), Positives = 29/70 (41%)
Frame = +3
Query: 117 DGEVVGDGSWNLTIYVTDLSEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHALWWP 296
DG + GS + T+ DL+ + + + +L L S G+ K+W W P
Sbjct: 126 DGRCLASGSGDTTVRFWDLNTQTPLFTCKGGSLNSCILVLISSVGQSCHKNWVLCIAWSP 185
Query: 297 TRNKWLSRPK 326
N +S K
Sbjct: 186 DGNHLVSGSK 195
>03_05_0530 -
25306788-25306919,25307446-25308037,25308152-25308975,
25309533-25309592,25310115-25310180,25310318-25310461,
25310616-25310756,25310898-25311056,25311818-25311884,
25311986-25312158,25312237-25312333,25312410-25312528,
25312867-25312951,25313120-25313321,25314456-25314633
Length = 1012
Score = 30.3 bits (65), Expect = 0.83
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 381 SA*NGGQRRREPRT-GPGCVSAGRAICCEWATT 286
+A GG RR+PR P ++A R +C +W +T
Sbjct: 534 AAATGGNPRRDPRRLPPRSLAASRCVCTDWRST 566
>11_01_0051 +
391254-391343,391460-391862,392345-392352,393627-393704,
395371-395763
Length = 323
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/63 (20%), Positives = 29/63 (46%)
Frame = +3
Query: 126 VVGDGSWNLTIYVTDLSEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHALWWPTRN 305
++ G +N+T++ + + RT G ++ ++ +S+ F + LWW +
Sbjct: 69 LINRGRYNMTLHWHGVRQMRTGWSDGPEYVTQCPVRPGQSYRYRFTVAAQEGTLWWHAHS 128
Query: 306 KWL 314
WL
Sbjct: 129 SWL 131
>12_01_0052 +
433203-433292,433409-433815,434435-434447,437081-437473
Length = 300
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/63 (20%), Positives = 29/63 (46%)
Frame = +3
Query: 126 VVGDGSWNLTIYVTDLSEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHALWWPTRN 305
++ G +N+T++ + + RT G ++ ++ +S+ F + LWW +
Sbjct: 69 LINRGRYNVTLHWHGVRQMRTGWSDGPEYVTQCPVRPGQSYRYRFTVAAQEGTLWWHAHS 128
Query: 306 KWL 314
WL
Sbjct: 129 SWL 131
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 300 RNKWLSRPKHT-LDQYGVHADAALHFTPMHKPIRIQLPDL 416
R + +S+P +T + Q+ H AL F P HK R+ DL
Sbjct: 1543 RMQAMSKPTYTAITQHAKHGKPALVFVPTHKHARLTAVDL 1582
>03_01_0574 + 4243019-4244284
Length = 421
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 111 LADGEVVGDGSWNLTIYVTDLSEKRTMVVKGDMHIGGV 224
L DG+ + SWN VT+L EK+T + GD + G+
Sbjct: 165 LEDGDYLELVSWNPNWAVTEL-EKKTAALTGDANANGI 201
>08_01_0989 - 10019898-10020057,10020157-10020314
Length = 105
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 397 LIGLCIGV-KWRAASA*TPYWSRVCFGRESH 308
L+ LC G+ WR ++ WS+ C G E+H
Sbjct: 43 LMFLCNGICTWRLPTSIMEMWSQRCLGNETH 73
>02_01_0112 -
839048-839552,839638-839720,839828-839982,840078-840557,
840855-841097,841189-841403,841489-841756,842477-842525
Length = 665
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 129 VGDGSWNLTIYVTDLSEKRTMVVKGDMHIGGVML--KLTESFGKEFKKDWS 275
+G G+++++I D + GD H+GG ++ E F K KK +S
Sbjct: 229 LGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKYS 279
>04_01_0255 - 3395548-3396129,3396203-3397834
Length = 737
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 273 SDHALWWPTRNKWLSRPKHTLDQYGVHADAALHFTPMHK 389
+DH L W RN W+ PK +Y A A F + K
Sbjct: 630 ADHLLQWLHRNYWVKFPK---SEYSYEAKFAQMFPKLRK 665
>02_01_0355 +
2558792-2558862,2558993-2559099,2559185-2559615,
2560100-2560735
Length = 414
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 67 VTILVIKCNRTRKKCWLTEKS*ATDHGIS 153
+T VI N RK WLT+K + DH +S
Sbjct: 280 ITQSVIFVNTRRKVDWLTDKMRSRDHTVS 308
>01_06_1357 +
36632992-36633621,36634003-36635136,36635525-36636193,
36636250-36636343,36636378-36636490
Length = 879
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/53 (26%), Positives = 21/53 (39%)
Frame = +2
Query: 254 RIQKGLVRSRSVVAHSQQMALPAETHPGPVRGSRRRCPPFHADAQANQNPTAR 412
RI + R R + A+P P P RG R+ P A+ + T +
Sbjct: 311 RIHPSIFRGRHIRCSPNGAAVPESPEPAPRRGRRKSPSPSPPKAKTTRRRTKK 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,974,022
Number of Sequences: 37544
Number of extensions: 310677
Number of successful extensions: 987
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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