Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_H13
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 316 1e-87
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 315 3e-87
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 315 4e-87
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 29 0.68
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 26 3.6
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 6.3
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 6.3
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 6.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 6.3
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 8.4
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 8.4
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 8.4
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 316 bits (777), Expect = 1e-87
Identities = 142/196 (72%), Positives = 165/196 (84%)
Frame = +2
Query: 8 GPKKHLKRLNAPKAWMLDKLGGVYAPRXSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 187
GPKKHLKR+ AP W+LDKL G YAP+ S GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 4 GPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKA 63
Query: 188 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 367
I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKL
Sbjct: 64 ILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKL 123
Query: 368 CKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMI 547
CKV+RV G K VP+LVTHDGRT+RYPDPLIKVND+++L++ TNKI FIKFD+ M+
Sbjct: 124 CKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMV 183
Query: 548 TGGRNLRRVGTIVSRE 595
TGGRN+ RVGTIV RE
Sbjct: 184 TGGRNMGRVGTIVHRE 199
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 315 bits (774), Expect = 3e-87
Identities = 141/196 (71%), Positives = 165/196 (84%)
Frame = +2
Query: 8 GPKKHLKRLNAPKAWMLDKLGGVYAPRXSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 187
GPKKHLKR+ AP W+LDKL G YAP+ S GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 4 GPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKA 63
Query: 188 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 367
I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKL
Sbjct: 64 ILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKL 123
Query: 368 CKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMI 547
CKV+RV G K VP+LVTHDGRT+RYPDPLIKVND+++L++ TNKI FIKFD+ M+
Sbjct: 124 CKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMV 183
Query: 548 TGGRNLRRVGTIVSRE 595
TGGRN+ RVGTIV RE
Sbjct: 184 TGGRNMGRVGTIVHRE 199
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 315 bits (773), Expect = 4e-87
Identities = 141/196 (71%), Positives = 165/196 (84%)
Frame = +2
Query: 8 GPKKHLKRLNAPKAWMLDKLGGVYAPRXSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 187
GPKKHLKR+ AP W+LDKL G YAP+ S GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 4 GPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKA 63
Query: 188 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKL 367
I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKL
Sbjct: 64 ILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKL 123
Query: 368 CKVRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMI 547
CKV+RV G K VP+LVTHDGRT+RYPDPLIKVND+++L++ TNKI FIKFD+ M+
Sbjct: 124 CKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMV 183
Query: 548 TGGRNLRRVGTIVSRE 595
TGGRN+ RVGTIV RE
Sbjct: 184 TGGRNMGRVGTIVHRE 199
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 28.7 bits (61), Expect = 0.68
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 457 HQGERLGAARHLHQQDHGLHQVRLRQPLHD 546
H G LGA +H H + G H V P++D
Sbjct: 175 HHGPTLGAKQHSHSHEDGAHGVH-EHPVYD 203
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 458 IKVNDSVQLDISTNKIMDFIKFDSGNL 538
IK+++ S NKI+DF+K D NL
Sbjct: 129 IKLSNKNGQSASKNKILDFLKSDKENL 155
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 6.3
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -1
Query: 411 YGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGS 232
YGTLL L L + + + +LP ++ +F ++ T+ G + S
Sbjct: 578 YGTLLMHFEPTYALSRLVSFAPPEVTF--SLPELDFLTSVFNFPLALRNTATRILGIILS 635
Query: 231 VR--TFPSTLMRRCFTILSTS 175
+ T S ++ CFTI+STS
Sbjct: 636 TKDSTRISEVLSSCFTIISTS 656
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -1
Query: 393 PVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFS 274
P+ RRT L L+ + W F S + RN +FS
Sbjct: 423 PILKRRTPQELLLSGRDLTPWPQIRRFDSLLARNRGDIFS 462
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.4 bits (53), Expect = 6.3
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = -1
Query: 513 KSMILLVEMSSCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSL 361
K LL+E+SS E+ T+ S YRS Y L TL L
Sbjct: 661 KIQSLLIELSSHEENLTISSEKIYRSFLSRISEHYNELRNVTTVLGTLDCL 711
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 260 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYL-VTHDGRT 436
+V S+EK N++F + Y+V + + + K+ ++ ++ K+VP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 437 LR 442
L+
Sbjct: 1778 LK 1779
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 128 LVIFLRNRLKYALTGNEVLKIV 193
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 303 IKRNNSFVFSMDTTSINPAGYVGSV 229
+K+ ++ VF +INPA Y G+V
Sbjct: 40 LKKRDTNVFDSVVDTINPASYFGTV 64
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 156 LSRFRRKITSGKHSRSLWGPVEXRGAYTPPSLS 58
L R +R + + S+W +E A+ PSLS
Sbjct: 597 LLRLKRSNRTAAQTASVWNRIERAAAHDGPSLS 629
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,509
Number of Sequences: 5004
Number of extensions: 47576
Number of successful extensions: 160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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