Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H12
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po...    27   1.8  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   1.8  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    25   4.2  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   7.3  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   7.3  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   7.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    24   9.6  

>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 284 QKPYYLKTIQLLSRPWYGKTSMISLHCMSCEPQVYLRNIF 165
           +KP Y K + +L     GKTS++++      PQVY   IF
Sbjct: 9   KKPIYRKIV-ILGDGAAGKTSLLNVFTKGYFPQVYEPTIF 47


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
 Frame = +2

Query: 71  KTVIYIQHSVWYLRPF--IKW-FLRKTTRLCELERICYGDKPGAHRTCNVEKSLMFSRT- 238
           K  +Y+  S +YL P   I W F+     L         +        N + S+ F  T 
Sbjct: 81  KYPVYVLLSTYYLTPLSQIAWAFIIDAISLLVARCFSRANPIKCSNQVNTQYSVSFLFTI 140

Query: 239 --KDVIEVVSFLDNMVFERRFVPQNFHNIIDSGVA 337
               +I V++++   +F    +  N HN++ S VA
Sbjct: 141 MASVLISVLNYISQKIFLNGLILGNSHNVVTSLVA 175


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +2

Query: 26  EHNCHIRRIN 55
           EHNCHI++IN
Sbjct: 487 EHNCHIQKIN 496


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 260 SFLDNMVFERRFVPQNFH 313
           SFL NM + R +V +N+H
Sbjct: 367 SFLHNMGYSRCYVDENYH 384


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +2

Query: 173 YGDKPGAHRTCNVEKSLMFSR--TKDVIEVVSFLDNMVFERRFVPQNFH 313
           Y   P   R      S M++R  TKD I V++ L+N     R +  N H
Sbjct: 449 YNQAPSLRRQDIKLTSNMYNRVMTKDNISVITLLENKENGSRLIVANCH 497


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 278 PYYLKTIQLLSRPWYGKT 225
           PYY + I      WYGKT
Sbjct: 27  PYYYEYITFAKLRWYGKT 44


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 32  NCHIRRINGTKKKKTVIYIQHSVWYLRPFIKWFLRKT 142
           N  I+R NG++K KTV    +   Y    IK FLR T
Sbjct: 780 NALIKR-NGSRKGKTVDESHYEWLYEDNIIKGFLRVT 815


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,502
Number of Sequences: 5004
Number of extensions: 42997
Number of successful extensions: 86
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)