Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H12
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0511 - 34425605-34425850,34426120-34426284,34426365-344266...    31   0.58 
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985...    28   3.1  
03_06_0513 - 34432798-34433043,34433272-34433436,34433557-344338...    28   3.1  
02_03_0106 + 15292869-15296138                                         28   4.1  
09_01_0103 - 1628763-1628879,1641827-1642921,1645126-1645476,164...    27   5.4  
11_03_0107 + 10084234-10084348,10084830-10084834,10085351-100858...    27   7.2  

>03_06_0511 -
           34425605-34425850,34426120-34426284,34426365-34426629,
           34427805-34427884,34428051-34428149,34428387-34428644,
           34429081-34429215
          Length = 415

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 173 YGDKPGAHRTCNVE--KSLMFSRTKDVIEVVSFLDNMVFERRFVPQNFHNIIDSGVAIIV 346
           +G   G+ +TC +E  K  +FS TK V+E++     +V    F  +   N +  G   I+
Sbjct: 266 FGKACGSVQTCEIEDAKHHLFSSTKSVVEILDLSIQLVKSISFDMEKAQNCLPRGYDDIM 325

Query: 347 R 349
           R
Sbjct: 326 R 326


>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
            27298701-27298766,27299151-27302660,27311604-27312224
          Length = 1676

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 206  NVEKSLMFSRTKDVIEVVSFLDNMVFERRFVPQNFHNI 319
            NVE  L + + K V E+ SFL    + RRF+ +NF  I
Sbjct: 1054 NVESVLSWKQPKTVSEIRSFLGLAGYYRRFI-ENFSKI 1090


>03_06_0513 -
           34432798-34433043,34433272-34433436,34433557-34433842,
           34434972-34435054,34435388-34435495,34435687-34435944,
           34436388-34436555,34436865-34437090,34437923-34438035,
           34438180-34438548,34439475-34439516,34439576-34439686,
           34439883-34440086
          Length = 792

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 197 RTCNVE--KSLMFSRTKDVIEVVSFLDNMVFERRFVPQNFHNIIDSGVAIIVR 349
           +TC +E  K  +FS TK V+E++     +V    F  +   N +  G   ++R
Sbjct: 651 QTCEIEDAKHYLFSSTKSVVEILDLSIQLVLRILFGMEKAQNSLPRGYHDVMR 703


>02_03_0106 + 15292869-15296138
          Length = 1089

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 8   DGHPL-VEHNCHIRRINGTKKKKTVIYIQHSVWYLRPFI 121
           DGHPL ++    + R  G  K +  + ++  VW +RP I
Sbjct: 370 DGHPLAIKMVAGVLRSRGKSKAEWEMVMRSDVWSMRPII 408


>09_01_0103 -
           1628763-1628879,1641827-1642921,1645126-1645476,
           1645567-1645734
          Length = 576

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +2

Query: 206 NVEKSLMFSRTKDVIEVVSFLDNMVFERRFVPQNFHNIIDSGVAIIVRTKKINLQLHRTF 385
           NVE    + + K V E+ SFL    + RRF+ +NF  I  S   ++   K +N +     
Sbjct: 436 NVESVTNWKQPKTVSEIRSFLGLAGYYRRFI-ENFSKIAKSMTRLL--QKDVNYKWSEEC 492

Query: 386 VVSFRGL 406
             SF+ L
Sbjct: 493 EQSFQEL 499


>11_03_0107 +
           10084234-10084348,10084830-10084834,10085351-10085803,
           10086143-10086267,10087282-10087345,10087452-10087508,
           10088475-10088485,10089923-10090802
          Length = 569

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 245 VIEVVSFLDNMVFERRFVPQNFHNIIDSG 331
           +IEVV+ L  + F RR+V +N   ++  G
Sbjct: 528 IIEVVALLSYVFFARRYVYRNEQKVVTQG 556


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,103,404
Number of Sequences: 37544
Number of extensions: 230592
Number of successful extensions: 497
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)