Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H12
         (457 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC028725-1|AAH28725.3|  334|Homo sapiens ELMO/CED-12 domain cont...    51   2e-06
BC015168-1|AAH15168.2|  293|Homo sapiens ELMO/CED-12 domain cont...    42   0.001
BC146668-1|AAI46669.1|  261|Homo sapiens claudin 18 protein.           29   10.0 
BC142708-1|AAI42709.1|  261|Homo sapiens claudin 18 protein.           29   10.0 
AY358479-1|AAQ88843.1|  261|Homo sapiens CLDN18 protein.               29   10.0 
AF349452-1|AAL15637.1|  261|Homo sapiens claudin-18A2.1 protein.       29   10.0 
AF221069-1|AAF26448.1|  261|Homo sapiens Claudin-18 protein.           29   10.0 

>BC028725-1|AAH28725.3|  334|Homo sapiens ELMO/CED-12 domain
           containing 1 protein.
          Length = 334

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 22/41 (53%), Positives = 29/41 (70%)
 Frame = +2

Query: 119 IKWFLRKTTRLCELERICYGDKPGAHRTCNVEKSLMFSRTK 241
           +K+ +RK T  CEL+RICY  KPGA RT  +E SL  S++K
Sbjct: 24  LKFVMRKLTGRCELQRICYNTKPGASRTMKIETSLRDSKSK 64


>BC015168-1|AAH15168.2|  293|Homo sapiens ELMO/CED-12 domain
           containing 2 protein.
          Length = 293

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
 Frame = +2

Query: 104 YLRPFIKWFLRKTTRLCELERICYGDKPGAHRTCNVEKSLMFSRTK------DVI--EVV 259
           + R ++KW LR+ T  CEL+RI +    GA RT  +E SL +S+ K       V+  EV 
Sbjct: 13  FFRFWMKWLLRQMTGKCELQRI-FDTYVGAQRTHRIENSLTYSKNKVLQKATHVVQSEVD 71

Query: 260 SFLDNMVFERRFVPQ 304
            ++D+++ E+   P+
Sbjct: 72  KYVDDIMKEKNINPE 86


>BC146668-1|AAI46669.1|  261|Homo sapiens claudin 18 protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 187 WGSQDMQCREIIDVFPYQGRDRSCI 261
           W +QD+    +  VF Y+G  RSC+
Sbjct: 30  WSTQDLYDNPVTSVFQYEGLWRSCV 54


>BC142708-1|AAI42709.1|  261|Homo sapiens claudin 18 protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 187 WGSQDMQCREIIDVFPYQGRDRSCI 261
           W +QD+    +  VF Y+G  RSC+
Sbjct: 30  WSTQDLYDNPVTSVFQYEGLWRSCV 54


>AY358479-1|AAQ88843.1|  261|Homo sapiens CLDN18 protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 187 WGSQDMQCREIIDVFPYQGRDRSCI 261
           W +QD+    +  VF Y+G  RSC+
Sbjct: 30  WSTQDLYDNPVTSVFQYEGLWRSCV 54


>AF349452-1|AAL15637.1|  261|Homo sapiens claudin-18A2.1 protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 187 WGSQDMQCREIIDVFPYQGRDRSCI 261
           W +QD+    +  VF YQG  RSC+
Sbjct: 30  WSTQDLYNNPVTAVFNYQGLWRSCV 54


>AF221069-1|AAF26448.1|  261|Homo sapiens Claudin-18 protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 187 WGSQDMQCREIIDVFPYQGRDRSCI 261
           W +QD+    +  VF Y+G  RSC+
Sbjct: 30  WSTQDLYDNPVTSVFQYEGLWRSCV 54


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,010,736
Number of Sequences: 237096
Number of extensions: 1347465
Number of successful extensions: 2094
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2094
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)