Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H12
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical...    29   1.6  
Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U80839-9|AAB37922.2|  302|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical p...    27   8.6  

>AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical
           protein Y51A2D.7b protein.
          Length = 1057

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = -3

Query: 257 QLLSRPWYGKTSMISLHCMSCEPQVYLRNIFVPVHIIVLSSVRTI**MVLNTTQSAVYRS 78
           Q+L++ W     +  L   S +P+  L+   + VH+ +L + RTI    L+T  +A   S
Sbjct: 533 QMLAKMWAEFGGLRELIAFSFDPESPLKRDSIHVHMNLLHNFRTIFDWELHTAPAAPKNS 592

Query: 77  QSFFSWF 57
             F+  +
Sbjct: 593 YGFWKLY 599


>Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical
           protein F36F2.6 protein.
          Length = 659

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 107 LRPFIKWFLRKTTRLCELERICYGDKPGAHRTCNV 211
           LRP    FL K + + E+  + YG +  AHR   +
Sbjct: 186 LRPHTTEFLNKMSNMYEMHIVTYGQRQYAHRIAQI 220


>U80839-9|AAB37922.2|  302|Caenorhabditis elegans Hypothetical
           protein ZC204.7 protein.
          Length = 302

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 291 LLSKTILSKNDTTSITSLVRENINDFSTL 205
           L+S + LSKN T  I  L +E+IN+  TL
Sbjct: 28  LISISFLSKNTTEIIRMLEKEDINETITL 56


>Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical
           protein D1054.12 protein.
          Length = 336

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 230 KTSMISLHCMSCEPQVYLRNIFVPV 156
           K SM++LHC+      YL  I +PV
Sbjct: 49  KASMLALHCIGAFVDFYLSFIAIPV 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,264,575
Number of Sequences: 27780
Number of extensions: 235783
Number of successful extensions: 586
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)