Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H11
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.67 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 402 SLHHWKGNRRLGPRPHPQTR*PMHRPPGIPHL 497
           S HH  GN  +GP   P      H+   + HL
Sbjct: 333 SPHHQHGNHTMGPTMGPPHHHHHHQTQSLQHL 364


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/47 (21%), Positives = 18/47 (38%)
 Frame = +3

Query: 204 DHRGWRRLLQHVLQRDRSWQARSPCRLRRS*THCS*RCPHWHIQTVV 344
           DH  W   +  +    + W  R P  L     H     P+W ++ ++
Sbjct: 469 DHLVWNSWMPSIRGAIQQWTCRQPEPLIELIEHWMPLLPNWILENIL 515


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/32 (21%), Positives = 19/32 (59%)
 Frame = -1

Query: 180  RLDAVLKAIQLPAGISDLDSGLANVYREPLRI 85
            ++ A+  ++++PA I+  D      Y+E +++
Sbjct: 1265 KIVALAPSVRVPAKIASFDDKFTATYKEDVKL 1296


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 148 PSRHFRSGLR 119
           P RH+RSGL+
Sbjct: 139 PLRHYRSGLK 148


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 247 ETGAGKHVPRAVFVDLEPTVVDDVRTGTYRQL 342
           E  A  H+    + D+EPTV         RQL
Sbjct: 236 ERRAQSHLEAHCYFDIEPTVQQHQPVTVNRQL 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,416
Number of Sequences: 438
Number of extensions: 4588
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)