Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_H10
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 126 2e-29
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 126 2e-29
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 100 9e-22
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 29 2.0
06_03_1416 + 30027066-30027663,30027739-30027848,30027927-300280... 29 3.5
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 28 6.1
06_03_1445 - 30209354-30209396,30209798-30209875,30210220-302102... 27 8.1
06_03_1433 - 30129184-30129226,30129628-30129705,30130050-301301... 27 8.1
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 8.1
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 126 bits (303), Expect = 2e-29
Identities = 64/128 (50%), Positives = 80/128 (62%)
Frame = +3
Query: 183 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83
Query: 363 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 542
A LFK+L KYRPE K+P ++ G N VT L+E+
Sbjct: 84 LATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQS 142
Query: 543 KAQLVVIA 566
KAQLVVIA
Sbjct: 143 KAQLVVIA 150
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 126 bits (303), Expect = 2e-29
Identities = 64/128 (50%), Positives = 80/128 (62%)
Frame = +3
Query: 183 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67
Query: 363 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 542
A LFK+L KYRPE K+P ++ G N VT L+E+
Sbjct: 68 LATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQS 126
Query: 543 KAQLVVIA 566
KAQLVVIA
Sbjct: 127 KAQLVVIA 134
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 100 bits (239), Expect = 9e-22
Identities = 57/128 (44%), Positives = 76/128 (59%)
Frame = +3
Query: 183 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
LFEKR K F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKN 84
Query: 363 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 542
++L++ + E K+P ++ G + VT L+E+
Sbjct: 85 LGCQKERLLKRAQAEAEGKTVEA-----------------KKPIVVKYGLDHVTYLIEQS 127
Query: 543 KAQLVVIA 566
KAQLVVIA
Sbjct: 128 KAQLVVIA 135
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +3
Query: 204 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP--INQFTQTLDK-TTAK 371
N +GQD + ++ +V+ Y I Q+ + +L RLK PP + TQ + K K
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKNCK 411
Query: 372 GLFKILEK 395
+L+K
Sbjct: 412 AAKDVLQK 419
>06_03_1416 +
30027066-30027663,30027739-30027848,30027927-30028003,
30028080-30028173,30028314-30028437,30028537-30028591,
30028666-30028747,30028832-30028909,30028995-30029135,
30029416-30029645,30029724-30029867,30029934-30030047,
30030139-30030994,30031149-30031312,30031398-30031445,
30033435-30033500,30033845-30033922,30034324-30034366
Length = 1033
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +2
Query: 44 LFVAVRSLSLNPFQNGAEEA*EEDREKSSGRSTCGEES*AQEDCKPSIREENKELC 211
LF RSLS + + AEE EED E + E+ + EE +E C
Sbjct: 92 LFEVDRSLSFSTAGDSAEEGDEEDEEGEEEETAGDSAEEGDEEDEEGEEEETEEEC 147
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 304 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 429
+++ +R S++ K QP C+RSW G+ +Q G++
Sbjct: 74 TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114
>06_03_1445 -
30209354-30209396,30209798-30209875,30210220-30210285,
30212275-30212322,30212408-30212571,30212726-30213581,
30213673-30213786,30213853-30213996,30214075-30214304,
30214584-30214724,30214810-30214887,30214972-30215053,
30215130-30215184,30215284-30215407,30215548-30215641,
30215718-30215794,30215873-30215982,30216058-30216655
Length = 1033
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 44 LFVAVRSLSLNPFQNGAEEA*EEDREKSSGRSTCGEES*AQEDCKPSIREENKELC 211
LF RSL+ + + AEE EED E + E+ + EE +E C
Sbjct: 92 LFEVDRSLAFSTAGDSAEEGDEEDEEGEEEETAGDSAEEGDEEDEEGEEEETEEEC 147
>06_03_1433 -
30129184-30129226,30129628-30129705,30130050-30130115,
30132105-30132152,30132238-30132401,30132556-30133411,
30133503-30133616,30133683-30133826,30133905-30134134,
30134414-30134554,30134640-30134717,30134802-30134883,
30134958-30135012,30135112-30135235,30135376-30135469,
30135546-30135622,30135701-30135810,30135886-30136483
Length = 1033
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 44 LFVAVRSLSLNPFQNGAEEA*EEDREKSSGRSTCGEES*AQEDCKPSIREENKELC 211
LF RSL+ + + AEE EED E + E+ + EE +E C
Sbjct: 92 LFEVDRSLAFSTAGDSAEEGDEEDEEGEEEETAGDSAEEGDEEDEEGEEEETEEEC 147
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 227 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 334
P NQ P +Y+H AS G V ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,293,732
Number of Sequences: 37544
Number of extensions: 262824
Number of successful extensions: 759
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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