Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_H10
(576 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 155 3e-38
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 139 1e-33
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 118 2e-27
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 98 3e-21
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 31 0.59
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 31 0.59
AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cel... 31 0.59
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 31 0.59
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 28 5.5
Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical pr... 27 7.2
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 155 bits (375), Expect = 3e-38
Identities = 71/128 (55%), Positives = 90/128 (70%)
Frame = +3
Query: 183 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 363 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 542
+A+ FK+L+KYRPE+ E KRPNT+R G NT+T+LVE +
Sbjct: 92 SARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETR 151
Query: 543 KAQLVVIA 566
+AQLV+IA
Sbjct: 152 RAQLVLIA 159
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 139 bits (336), Expect = 1e-33
Identities = 70/128 (54%), Positives = 89/128 (69%)
Frame = +3
Query: 183 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 363 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 542
+A+ FK+L+KYRPE+ KRPNT+R G NT+T+LVE +
Sbjct: 92 SARQAFKLLDKYRPESTEVT--------------------KRPNTVRHGVNTITRLVETR 131
Query: 543 KAQLVVIA 566
+AQLV+IA
Sbjct: 132 RAQLVLIA 139
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 118 bits (285), Expect = 2e-27
Identities = 51/76 (67%), Positives = 64/76 (84%)
Frame = +3
Query: 183 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 362
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194
Query: 363 TAKGLFKILEKYRPET 410
+A+ FK+L+KYRPE+
Sbjct: 195 SARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 98.3 bits (234), Expect = 3e-21
Identities = 42/58 (72%), Positives = 50/58 (86%)
Frame = +3
Query: 183 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 356
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 31.1 bits (67), Expect = 0.59
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 113 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 292
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 31 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 88
Query: 293 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 388
G AS+Q++ A+ P++ + + QD+
Sbjct: 89 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 120
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 31.1 bits (67), Expect = 0.59
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 113 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 292
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 293 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 388
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform b protein.
Length = 512
Score = 31.1 bits (67), Expect = 0.59
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 113 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 292
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 293 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 388
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 31.1 bits (67), Expect = 0.59
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 113 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 292
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 293 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 388
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 27.9 bits (59), Expect = 5.5
Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Frame = +2
Query: 83 QNGAEEA*EEDREKSSGRSTCGEES*AQEDCKPSIR--------EENKELCYWPGHPANQ 238
Q EEA ED++ S + GE S +D + S E N PG P Q
Sbjct: 591 QEYQEEA-SEDKDDSMDSAEAGERSDDPQDLRESSSSSDESDESEGNSSPSEAPGSPRQQ 649
Query: 239 RSIPFRAMAEIYSHPASKGCVTASSQSAAANQPV 340
P A E P + Q A +QPV
Sbjct: 650 DPEPMEAFGEASEAPPPPPDQGSKDQEAILDQPV 683
>Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical
protein W05B10.5 protein.
Length = 325
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -3
Query: 238 LVGWMSWPIAKF--FVLFSNRGFTIF 167
LVGW +W I F +L SNR F +F
Sbjct: 97 LVGWFAWCIGPFSQVLLTSNRIFAVF 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,719,216
Number of Sequences: 27780
Number of extensions: 211481
Number of successful extensions: 517
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -