Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H09
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    25   5.7  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.7  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   10.0 
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   10.0 

>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 250 DRTCRSTYVCRSLYILWLCGFL*INVSVHILKKKKKNSRLVHSLFTRSRM 399
           D  C + + C+SL +L   G   +   + + +  +KN R++ ++  R RM
Sbjct: 294 DVRCMAVFECKSLDVLISGGMDMMLAVIPVRQFNRKNHRMISAVPQRPRM 343


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 223 PLTRYNIMGDRTCRSTYVC 279
           PL   +++ +RTC S+Y+C
Sbjct: 339 PLAPMDVLTERTCLSSYLC 357


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 135 EKIKHVYVANGRDARRPTVTDS 200
           + +K  Y+++  DAR P+V+DS
Sbjct: 145 DTLKKTYLSSENDARYPSVSDS 166


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 337 ILKKKKKNSRLVHSLFTRSRMH 402
           +L   K+NSR++  + T SR+H
Sbjct: 589 LLSDDKENSRILREVMTLSRLH 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,448
Number of Sequences: 5004
Number of extensions: 42886
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)