Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H09
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1091 - 27540163-27540377,27540662-27540819,27540849-27540973     29   3.3  
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688...    29   3.3  
04_04_0231 - 23790745-23791131,23791207-23792382                       27   7.7  

>06_03_1091 - 27540163-27540377,27540662-27540819,27540849-27540973
          Length = 165

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +2

Query: 263 AVHTCAVASTFCGYVVSYK*TFLYIFXXXXXXT 361
           A  TCAVAS   GY+V +K  FLYI       T
Sbjct: 50  ASDTCAVASAASGYMV-FKSLFLYIIIGTVTTT 81


>01_03_0103 -
           12567986-12568141,12568307-12568442,12568751-12568824,
           12568932-12569175,12569480-12569766,12570618-12571103,
           12571348-12571459,12571540-12571745,12573071-12573276,
           12573831-12574162,12574284-12574825,12574967-12576308,
           12576386-12576457,12578438-12578505,12579011-12580174
          Length = 1808

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 447 CPMVRENCGFTQASQPALH*VRFQDPVS 530
           CP V++NCGF ++ +PAL    F++  S
Sbjct: 631 CP-VKQNCGFAESKRPALTLCCFEEDCS 657


>04_04_0231 - 23790745-23791131,23791207-23792382
          Length = 520

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 244 MGDRTCRSTYVCRSLYILWLCGFL*INVSVHILKKKKKNSRLVHSLFTRSRMHAL 408
           M D  C+ + V  ++ + +LC    I+ ++H+ +   KN   + S      +HAL
Sbjct: 288 MCDEECKPSVVTYTVIVNFLCRDGKIDAAMHVFRMACKNGCCLDSTICNVLLHAL 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,830,517
Number of Sequences: 37544
Number of extensions: 291953
Number of successful extensions: 700
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)