Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H08
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    31   0.077
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    27   1.2  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   2.9  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    26   3.8  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    26   3.8  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    25   5.0  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   6.7  
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...    25   8.8  
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...    25   8.8  

>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 31.5 bits (68), Expect = 0.077
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = +2

Query: 305 CTIPGC--KFTA-ESLLEFENHYNASHRYTCGQCKRVQPSPHLLDLHIQETHDSFFAVMA 475
           CT P C   FT  E L   E  +     ++C  C R      +L+ H+Q+ H     +  
Sbjct: 28  CTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNLSE 87

Query: 476 ERKPSYCCYIEEC 514
            R  +  C++  C
Sbjct: 88  RRMLNASCFLGFC 100


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 398 KRVQPSPHLLDLHIQETHDSFF 463
           +RVQP    LD+  Q+ HD+FF
Sbjct: 282 ERVQPKMGKLDIDYQKLHDAFF 303


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +2

Query: 281 YHDIIQTTCTIPGCKFTAESLLEFENHYNASH 376
           Y +  + +C+ P C +  + L +   H N+ H
Sbjct: 343 YKEAREYSCSFPECNYRFKRLYDMHRHLNSHH 374


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 316 RYSASRLYNVMVKIFLIQIVDTKPRWSF 233
           R   +R+YN+ ++IF    ++T  RW+F
Sbjct: 236 REMRARIYNIHLQIFQKVQLETAKRWTF 263


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 394 MQTGSAFTSSLGFAYTGDTRFVLRSHG 474
           +Q G    SS GF      RFVLR HG
Sbjct: 232 LQIGLNLVSSDGFKIQNVKRFVLRCHG 258


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 142 IFSNFRSIRQYFYFISLFLDILLIGYAFLVPLQY 41
           IF+ + SI++Y     +FL +   G+A  V + Y
Sbjct: 53  IFTGYESIKRYTIGNEMFLQLAKDGFALPVSMSY 86


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 214 IVESPSSYSVELQLLNDDCTKLHRIFSN 131
           +V+   S  +E  +LN D T+LH +  N
Sbjct: 326 VVQLCKSEDIEGSILNKDMTQLHHLLEN 353


>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 203 GLDDHLFLNDKTPPRLGVYDLD 268
           G+ +H+ L  K  P +G+Y +D
Sbjct: 105 GIQEHIDLGIKYDPSIGIYGMD 126


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 203 GLDDHLFLNDKTPPRLGVYDLD 268
           G+ +H+ L  K  P +G+Y +D
Sbjct: 105 GIQEHIDLGIKYDPSIGIYGMD 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,871
Number of Sequences: 5004
Number of extensions: 46415
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)