Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H08
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0680 + 21903520-21904093,21904474-21905162                       29   2.2  
11_04_0391 + 17127309-17127449,17127886-17127950,17129209-171293...    29   2.2  
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85...    29   2.9  
07_01_0008 - 56178-57095                                               27   6.7  
03_02_0102 + 5637469-5639064                                           27   8.8  
01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,317...    27   8.8  

>12_02_0680 + 21903520-21904093,21904474-21905162
          Length = 420

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 306 ALYRAVSSQPSRCWNSRIIITPRTDIL 386
           A Y A SS  SRC  +R+++  R D+L
Sbjct: 26  AAYAAASSSASRCGGARVLLLERFDLL 52


>11_04_0391 +
           17127309-17127449,17127886-17127950,17129209-17129305,
           17129729-17130193,17130505-17130528
          Length = 263

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 305 CTIPGCKFTAESLLEFENHYNASHRYTC 388
           C I GC    + L  FE+HY   H  +C
Sbjct: 73  CPISGCGAHLDCLENFEDHYRTRHTASC 100


>02_01_0113 -
           854108-854302,854399-854542,854658-854893,855036-855315,
           856891-857031,857259-857372
          Length = 369

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 266 DEEYLYHDIIQTTCTIPGCKFTAESLLEFENHYNASHRYT-CGQC 397
           +E ++  D ++  C  PGC  T  ++     H  A H+Y  C  C
Sbjct: 175 EESHVKLDYVEVVCCEPGCMKTFTNVECLRAHNQACHQYVQCDIC 219


>07_01_0008 - 56178-57095
          Length = 305

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 299 TTCTIPGCKFTAESLLEFENHYNASHRYTCGQCKRVQPSPH 421
           T CT+    F A + ++     + SH  T     R QP PH
Sbjct: 189 TNCTLFAWAFRANNTMQHSQPLDPSHLLTTPPPHRPQPHPH 229


>03_02_0102 + 5637469-5639064
          Length = 531

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 493 VRRFPFGHDCEERIVCLLYMQIQEMR*RLNPFALPTSISVRG 368
           +RRF F H    R + LL + +       +PFAL T++ V G
Sbjct: 80  LRRFRFAHGDPLRALSLLSLALDRHGVAPSPFALDTALYVLG 121


>01_01_0420 +
           3175544-3176696,3177035-3178581,3179623-3179688,
           3179892-3179999
          Length = 957

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = +2

Query: 155 SAVIVEKLQLYGVGRRGLDDHLFLNDKTPPRLGVYDLDEEYLYHDIIQTTCTIPGCKFTA 334
           S V  + L+++ VG   + D       T PRL V  L     +  + Q+      C+F A
Sbjct: 606 SLVACKNLEVFDVGFNQISDTFPCWMSTLPRLQVIALRSNKFFGQVAQSAVEKNSCEFPA 665

Query: 335 ESLLEFENH 361
             +++  ++
Sbjct: 666 ARIIDLASN 674


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,674,979
Number of Sequences: 37544
Number of extensions: 276857
Number of successful extensions: 619
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)