Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_H08
(514 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40414-1|AAA81404.2| 543|Caenorhabditis elegans Hypothetical pr... 33 0.12
Z81556-2|CAB04525.2| 445|Caenorhabditis elegans Hypothetical pr... 32 0.21
Z69302-10|CAA93267.1| 295|Caenorhabditis elegans Hypothetical p... 32 0.28
Z47074-3|CAA87376.1| 295|Caenorhabditis elegans Hypothetical pr... 32 0.28
AF008590-1|AAB63299.1| 295|Caenorhabditis elegans paraquat resp... 32 0.28
Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical pr... 31 0.48
AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc ... 31 0.48
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 31 0.64
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 31 0.64
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 31 0.64
Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical pr... 30 0.85
Z95310-2|CAB08563.1| 394|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z83104-6|CAB05479.1| 394|Caenorhabditis elegans Hypothetical pr... 30 1.1
U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical pr... 29 2.0
U12964-6|AAM29681.1| 329|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z30423-9|CAA83012.1| 385|Caenorhabditis elegans Hypothetical pr... 29 2.6
U29380-4|AAA68738.1| 646|Caenorhabditis elegans Hypothetical pr... 29 2.6
AY071926-1|AAL61544.1| 385|Caenorhabditis elegans RNA interfere... 29 2.6
Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical p... 28 3.4
Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical p... 28 3.4
Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical p... 28 3.4
AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication l... 28 3.4
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 28 4.5
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 28 4.5
AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 28 4.5
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 28 4.5
Z46828-2|CAA86857.1| 434|Caenorhabditis elegans Hypothetical pr... 27 7.9
U46670-3|AAP46279.1| 312|Caenorhabditis elegans Nuclear hormone... 27 7.9
U23139-3|AAK31486.2| 275|Caenorhabditis elegans Hypothetical pr... 27 7.9
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ... 27 7.9
>U40414-1|AAA81404.2| 543|Caenorhabditis elegans Hypothetical
protein F53B3.1 protein.
Length = 543
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/68 (25%), Positives = 25/68 (36%)
Frame = +2
Query: 263 LDEEYLYHDIIQTTCTIPGCKFTAESLLEFENHYNASHRYTCGQCKRVQPSPHLLDLHIQ 442
+ E ++ II+ C + C F A E H H Y C C + H+
Sbjct: 458 MTHERMHTGIIKFECKV--CDFRANRYTAMEEHKRDEHGYVCAICHERHAEYPEMKHHVY 515
Query: 443 ETHDSFFA 466
E H + A
Sbjct: 516 EEHGGYLA 523
>Z81556-2|CAB04525.2| 445|Caenorhabditis elegans Hypothetical
protein F58G1.2 protein.
Length = 445
Score = 32.3 bits (70), Expect = 0.21
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 272 EYLYHDIIQTTCTIPGCKFTAESLLEFENHYNASHRYTCGQCK 400
E ++ I++ CT+ C F A L+ E H H Y C C+
Sbjct: 363 ERVHTGILKFECTV--CDFRASRYLQMEEHTKEHHGYMCSVCQ 403
>Z69302-10|CAA93267.1| 295|Caenorhabditis elegans Hypothetical
protein F40F8.7 protein.
Length = 295
Score = 31.9 bits (69), Expect = 0.28
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 11/66 (16%)
Frame = +2
Query: 278 LYHDIIQTTCTIPGCKFTAESLLEFENHYNASH-----------RYTCGQCKRVQPSPHL 424
+YH C +P C+FT H N H C C+ V SP +
Sbjct: 182 IYHRNPPIKCNVPNCQFTTREARYIHFHKNYRHGIPLPESIDQGSRKCPHCRHVSKSPAM 241
Query: 425 LDLHIQ 442
L+ HI+
Sbjct: 242 LEKHIR 247
>Z47074-3|CAA87376.1| 295|Caenorhabditis elegans Hypothetical
protein F40F8.7 protein.
Length = 295
Score = 31.9 bits (69), Expect = 0.28
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 11/66 (16%)
Frame = +2
Query: 278 LYHDIIQTTCTIPGCKFTAESLLEFENHYNASH-----------RYTCGQCKRVQPSPHL 424
+YH C +P C+FT H N H C C+ V SP +
Sbjct: 182 IYHRNPPIKCNVPNCQFTTREARYIHFHKNYRHGIPLPESIDQGSRKCPHCRHVSKSPAM 241
Query: 425 LDLHIQ 442
L+ HI+
Sbjct: 242 LEKHIR 247
>AF008590-1|AAB63299.1| 295|Caenorhabditis elegans paraquat
responsive protein protein.
Length = 295
Score = 31.9 bits (69), Expect = 0.28
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 11/66 (16%)
Frame = +2
Query: 278 LYHDIIQTTCTIPGCKFTAESLLEFENHYNASH-----------RYTCGQCKRVQPSPHL 424
+YH C +P C+FT H N H C C+ V SP +
Sbjct: 182 IYHRNPPIKCNVPNCQFTTREARYIHFHKNYRHGIPLPESIDQGSRKCPHCRHVSKSPAM 241
Query: 425 LDLHIQ 442
L+ HI+
Sbjct: 242 LEKHIR 247
>Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical
protein M04B2.1 protein.
Length = 870
Score = 31.1 bits (67), Expect = 0.48
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Frame = +2
Query: 320 CKFTAESLLEFENHYNASH----RYTCGQCKRVQPSPHLLDLHIQETHDSFFAVMAERKP 487
C F ES L H H ++ C CK S + H ETH A E++
Sbjct: 426 CGFQTESKLVMSTHKENLHFTGSKFQCTMCKETDTSEQRMKDHYFETH-LVIAKSEEKES 484
Query: 488 SYCCYIEE 511
Y C I E
Sbjct: 485 KYPCAICE 492
>AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc
finger protein protein.
Length = 870
Score = 31.1 bits (67), Expect = 0.48
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Frame = +2
Query: 320 CKFTAESLLEFENHYNASH----RYTCGQCKRVQPSPHLLDLHIQETHDSFFAVMAERKP 487
C F ES L H H ++ C CK S + H ETH A E++
Sbjct: 426 CGFQTESKLVMSTHKENLHFTGSKFQCTMCKETDTSEQRMKDHYFETH-LVIAKSEEKES 484
Query: 488 SYCCYIEE 511
Y C I E
Sbjct: 485 KYPCAICE 492
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform b protein.
Length = 960
Score = 30.7 bits (66), Expect = 0.64
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 314 PGCKFTAESLLEFENHYNASHRYTCGQCKRVQPSPHLLDLHIQETH 451
P C F S F +H N + C C + L H++E+H
Sbjct: 317 PICGFMCPSKFHFNSHMNTHGDHQCSMCDYTSRTEGRLKKHMRESH 362
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform a protein.
Length = 982
Score = 30.7 bits (66), Expect = 0.64
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 314 PGCKFTAESLLEFENHYNASHRYTCGQCKRVQPSPHLLDLHIQETH 451
P C F S F +H N + C C + L H++E+H
Sbjct: 339 PICGFMCPSKFHFNSHMNTHGDHQCSMCDYTSRTEGRLKKHMRESH 384
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans
hunchback-related protein protein.
Length = 982
Score = 30.7 bits (66), Expect = 0.64
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 314 PGCKFTAESLLEFENHYNASHRYTCGQCKRVQPSPHLLDLHIQETH 451
P C F S F +H N + C C + L H++E+H
Sbjct: 339 PICGFMCPSKFHFNSHMNTHGDHQCSMCDYTSRTEGRLKKHMRESH 384
>Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical
protein F25D7.3 protein.
Length = 817
Score = 30.3 bits (65), Expect = 0.85
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 302 TCTIPGCKFTAESLLEFENHYNASHR-YTCGQCKRVQPSPHLLDLHIQET 448
TC + KFT L +A+ R Y+CG C + SP L H + T
Sbjct: 593 TCDVCDAKFTQYVHLRLHKRLHANERPYSCGTCGKKYISPSGLRTHWKTT 642
>Z95310-2|CAB08563.1| 394|Caenorhabditis elegans Hypothetical
protein F09B12.5 protein.
Length = 394
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 464 RRTNRVSPVYAN-PRDEVKAEPVCIAHKYIC 375
R TN+ SP + N P E P CI H+++C
Sbjct: 51 RHTNKNSPCFGNQPECEKHGLPRCIPHEWLC 81
>Z83104-6|CAB05479.1| 394|Caenorhabditis elegans Hypothetical
protein F09B12.5 protein.
Length = 394
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 464 RRTNRVSPVYAN-PRDEVKAEPVCIAHKYIC 375
R TN+ SP + N P E P CI H+++C
Sbjct: 51 RHTNKNSPCFGNQPECEKHGLPRCIPHEWLC 81
>U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical
protein C09F5.3 protein.
Length = 359
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Frame = +2
Query: 302 TCTIPGCKFTAESLLEFENHYNASHR----YTCGQCKRVQPSPHLLDLHIQETHD 454
+CT C F E+ F+ H R Y C C PS L H+Q +HD
Sbjct: 210 SCT--NCDFETENEKTFKEHSKQHSRQLIMYGCALCATSYPSQLHLITHVQMSHD 262
>U12964-6|AAM29681.1| 329|Caenorhabditis elegans Hypothetical
protein F26F4.8 protein.
Length = 329
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 305 CTIPGCKFTAESLLEFENHYNASH 376
C GC E++LE ENH N +H
Sbjct: 108 CRAEGCDQLVETMLEGENHANTAH 131
>Z30423-9|CAA83012.1| 385|Caenorhabditis elegans Hypothetical
protein T20G5.11 protein.
Length = 385
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 104 IEILSDRSKITKYSMEFSAVIVEKLQLYGV 193
I+ILSD+ + + YSM+F+ + V + ++ V
Sbjct: 275 IDILSDKKRFSDYSMDFNVLSVSTMGIHQV 304
>U29380-4|AAA68738.1| 646|Caenorhabditis elegans Hypothetical
protein ZK546.5 protein.
Length = 646
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +2
Query: 284 HDIIQTTCTIPGCKFTAESLLEFE--NHYNASHRYTCGQCKRVQPSPHLLDLHIQETHD 454
H++ TC + F + L +H+ +Y C C + S L+LH + H+
Sbjct: 268 HEVQNLTCELCSLVFPDDGKLRAHVTSHHTRRKKYICKFCGHISHSMSELNLHKNDVHN 326
>AY071926-1|AAL61544.1| 385|Caenorhabditis elegans RNA interference
promoting factor protein.
Length = 385
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 104 IEILSDRSKITKYSMEFSAVIVEKLQLYGV 193
I+ILSD+ + + YSM+F+ + V + ++ V
Sbjct: 275 IDILSDKKRFSDYSMDFNVLSVSTMGIHQV 304
>Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Frame = +2
Query: 119 DRSKITKYSMEFSAVIVEKLQL-------------YGVGRRGLDDHLFLNDKTPPRLGVY 259
DRS+ KY+++ SA I+ + L Y + RR LD+H +++ T R VY
Sbjct: 512 DRSRPLKYNVQMSAPIMSRFDLFFVLVDECNEVTDYAIARRILDNHRAISEHT-ERDSVY 570
Query: 260 DLDE 271
+D+
Sbjct: 571 KIDD 574
>Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Frame = +2
Query: 119 DRSKITKYSMEFSAVIVEKLQL-------------YGVGRRGLDDHLFLNDKTPPRLGVY 259
DRS+ KY+++ SA I+ + L Y + RR LD+H +++ T R VY
Sbjct: 512 DRSRPLKYNVQMSAPIMSRFDLFFVLVDECNEVTDYAIARRILDNHRAISEHT-ERDSVY 570
Query: 260 DLDE 271
+D+
Sbjct: 571 KIDD 574
>Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical
protein ZK632.1b protein.
Length = 516
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Frame = +2
Query: 119 DRSKITKYSMEFSAVIVEKLQL-------------YGVGRRGLDDHLFLNDKTPPRLGVY 259
DRS+ KY+++ SA I+ + L Y + RR LD+H +++ T R VY
Sbjct: 218 DRSRPLKYNVQMSAPIMSRFDLFFVLVDECNEVTDYAIARRILDNHRAISEHT-ERDSVY 276
Query: 260 DLDE 271
+D+
Sbjct: 277 KIDD 280
>AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication
licensing factor MCM2/3/5-type protein protein.
Length = 810
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Frame = +2
Query: 119 DRSKITKYSMEFSAVIVEKLQL-------------YGVGRRGLDDHLFLNDKTPPRLGVY 259
DRS+ KY+++ SA I+ + L Y + RR LD+H +++ T R VY
Sbjct: 512 DRSRPLKYNVQMSAPIMSRFDLFFVLVDECNEVTDYAIARRILDNHRAISEHT-ERDSVY 570
Query: 260 DLDE 271
+D+
Sbjct: 571 KIDD 574
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical protein
R107.8 protein.
Length = 1429
Score = 27.9 bits (59), Expect = 4.5
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = +2
Query: 185 YGVGRRGLD-DHLFLNDKTPPRLGVYDLDEEYLYHDIIQTTCT--IPGCKFTAESLLEFE 355
Y VG +G + D + KTP L + E + + I Q + TA L +
Sbjct: 1225 YLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN 1284
Query: 356 NHYNASHRYTCGQCKRVQPSPHLLDLHIQETH 451
NH+N + +C+ + + +DLHIQ TH
Sbjct: 1285 NHHNIVDIFD--RCRPERE--YSMDLHIQHTH 1312
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.elegans
homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 27.9 bits (59), Expect = 4.5
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = +2
Query: 185 YGVGRRGLD-DHLFLNDKTPPRLGVYDLDEEYLYHDIIQTTCT--IPGCKFTAESLLEFE 355
Y VG +G + D + KTP L + E + + I Q + TA L +
Sbjct: 1225 YLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN 1284
Query: 356 NHYNASHRYTCGQCKRVQPSPHLLDLHIQETH 451
NH+N + +C+ + + +DLHIQ TH
Sbjct: 1285 NHHNIVDIFD--RCRPERE--YSMDLHIQHTH 1312
>AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical
protein Y111B2A.10b protein.
Length = 312
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +2
Query: 362 YNASHRYTCGQCKRVQPSPHLLDLHIQETHD 454
+ A +TC C + P+ L +H + HD
Sbjct: 22 HTAGSIFTCVMCSKAFPNAEALQIHTDQVHD 52
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 305 CTIPGCKFTAESLLEFENH--YNASHRYTCGQCKRVQPSPHLLDLHIQETHD 454
C G +FT + L ++ S+R+ C C + P P L HI+ H+
Sbjct: 241 CIECGKRFTTVTALSTHKARVHSQSNRFECTICHKSYPVPSELRKHIKRVHE 292
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +2
Query: 362 YNASHRYTCGQCKRVQPSPHLLDLHIQETHD 454
+ A +TC C + P+ L +H + HD
Sbjct: 140 HTAGSIFTCVMCSKAFPNAEALQIHTDQVHD 170
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 305 CTIPGCKFTAESLLEFENH--YNASHRYTCGQCKRVQPSPHLLDLHIQETHD 454
C G +FT + L ++ S+R+ C C + P P L HI+ H+
Sbjct: 359 CIECGKRFTTVTALSTHKARVHSQSNRFECTICHKSYPVPSELRKHIKRVHE 410
>Z46828-2|CAA86857.1| 434|Caenorhabditis elegans Hypothetical
protein R03D7.4 protein.
Length = 434
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +2
Query: 401 RVQPSPHLLDLHIQETHDSFFAVMAERKPSYCCYIEEC 514
+V+P P +D+H Q+ S + E + Y + C
Sbjct: 138 KVEPKPEPVDVHEQQASSSSMSYQREHQKDYAPVVPTC 175
>U46670-3|AAP46279.1| 312|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform d protein.
Length = 312
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 282 TMTLYKRLALYRAVSSQPSRCWNSRIIITPR 374
T +Y+RL L+ V ++ CW + I P+
Sbjct: 258 TFDVYQRLNLFDQVGTRNFGCWGIEVFILPK 288
>U23139-3|AAK31486.2| 275|Caenorhabditis elegans Hypothetical
protein F13H8.4 protein.
Length = 275
Score = 27.1 bits (57), Expect = 7.9
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +3
Query: 204 DSTIIYS*MIKLHLGLVSTIWMRNIFTMTLYKRLALYRAVSSQPSRCWNS-RIIITPRTD 380
D ++ +I + +GL S ++ FT T R +Y+ +RC +I D
Sbjct: 26 DKVQVFFIVIAVLMGLFSLFFLCIGFTATGGTRETMYK---DDEARCGGKFACVIAMLID 82
Query: 381 ILVGNANGFSLHLISWICIY 440
+ A F + ++SW+CI+
Sbjct: 83 FFLIIAWLFIISIVSWLCIF 102
>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
protein ZC123.3 protein.
Length = 1623
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 380 YTCGQCKRVQPSPHLLDLHIQE-THDSFFAVMAE 478
Y C CK+ P LD+H++ TH S + ++E
Sbjct: 582 YVCNVCKQSYPQAANLDVHMRSMTHQSRMSRLSE 615
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,187,530
Number of Sequences: 27780
Number of extensions: 259564
Number of successful extensions: 705
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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