Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H08
         (514 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.086
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.35 
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    25   0.46 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.46 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   3.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   3.2  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   5.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.086
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
 Frame = +2

Query: 224 LNDKTPPRLGVYDLDEEYLYHDII-QTTCTIPGCKFTAESLLEFENHYNASH----RYTC 388
           +N  TP      D+      H +     C  PGC+   E    F  H N  H    R T 
Sbjct: 255 MNGTTPLDEKPLDVSSNDKVHPLYGHGVCKWPGCEVICEDYQAFLKHLNTEHTLDDRSTA 314

Query: 389 GQCKRVQPSPHLLDLHIQETHDSFFAVM 472
               R+Q     L++ +Q+  D   A+M
Sbjct: 315 QARVRMQVVSQ-LEIQLQKERDRLTAMM 341


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = +2

Query: 302 TCTIPGCKFTAESLLEFEN--HYNASHRYTCGQCKRVQPSPHLLDLHIQETHDS 457
           TC I G  F    +L+     HY     Y C  C     S   ++LHI+   DS
Sbjct: 233 TCDICGKSFGYNHVLKLHQVAHYGEKV-YKCTLCHETFGSKKTMELHIKTHSDS 285


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +2

Query: 302 TCTIPGCKFTAESLLE---FENHYNASHRYTCGQCKRVQPSPHLLDLHIQETHDS 457
           TC + G    +++ L+    + H      Y C  C+RV  S + L  HI   H S
Sbjct: 7   TCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHKS 61


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 362  YNASHRYTCGQCKRVQPSPHLLDLHIQETH 451
            Y   H Y CG C   +     L  HI +TH
Sbjct: 1064 YEGGHFYVCGDCTMAEDVYQTLK-HIIQTH 1092


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 353 ENHYNASHRYTCGQCKRVQPSPHLLDLHIQE 445
           ++H N  ++Y C  C       H L LH+++
Sbjct: 37  KSHSNV-YQYRCANCTYATKYCHSLKLHLRK 66


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 342 CWNSRIIITPRTDILVGNAN 401
           CW++   + P T ILV   N
Sbjct: 323 CWDTNTELNPNTFILVAENN 342


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 368 ASHRYTCGQCKRVQPSPHLLDLHIQETH 451
           A   ++C  C++V  S   L +HI+ TH
Sbjct: 13  AKKSFSCKYCEKVYVSLGALKMHIR-TH 39


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 234  KLHLGLVSTIWMR 272
            KL LGL S++W R
Sbjct: 1896 KLKLGLRSSLWSR 1908


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 234  KLHLGLVSTIWMR 272
            KL LGL S++W R
Sbjct: 1892 KLKLGLRSSLWSR 1904


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,124
Number of Sequences: 438
Number of extensions: 3077
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)