Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H07
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   308   5e-85
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   307   7e-85
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       29   0.51 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.6  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    27   2.1  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    26   4.8  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   4.8  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    25   6.3  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    25   6.3  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   6.3  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   8.3  
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    25   8.3  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   8.3  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  308 bits (755), Expect = 5e-85
 Identities = 140/194 (72%), Positives = 161/194 (82%)
 Frame = +1

Query: 13  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 192
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 193 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 372
           +SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120

Query: 373 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRPKFKFPGSQKISVSKKWGFTKYEREE 552
           KP G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG Q+I VSKKWGF++Y R+E
Sbjct: 121 KPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDE 180

Query: 553 FEKLRDAGRFANDG 594
           + + R  G    DG
Sbjct: 181 YIEKRSRGEIIPDG 194


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  307 bits (754), Expect = 7e-85
 Identities = 140/194 (72%), Positives = 161/194 (82%)
 Frame = +1

Query: 13  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 192
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 193 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 372
           +SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120

Query: 373 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRPKFKFPGSQKISVSKKWGFTKYEREE 552
           KP G VARV IGQ +MSVR+ D  +A  IEALRR ++KFPG Q+I VSKKWGF++Y R+E
Sbjct: 121 KPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDE 180

Query: 553 FEKLRDAGRFANDG 594
           + + R  G    DG
Sbjct: 181 YIEKRSRGEIIPDG 194


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 37  YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 213
           Y+   N     ++FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 214 G 216
           G
Sbjct: 94  G 94


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 94  DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 213
           DPK+R+F    KRAT  +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -3

Query: 407 PIRTRATVPWGFPNAPRIPVWSLSAPA---HDNILLMRMTWKGCSLIRMWN*SLPQFFTR 237
           P+RT +   WG+ N   IP+W +  PA   +  I    +T      +R +  +L +FFTR
Sbjct: 81  PLRTLSRW-WGYVNRIEIPLW-MRVPAFGLYSKIFGCNLTEADPDDVRQYK-NLAEFFTR 137

Query: 236 YL 231
            L
Sbjct: 138 KL 139


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/77 (19%), Positives = 31/77 (40%)
 Frame = +1

Query: 352 GMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRPKFKFPGSQKISVSKKWGF 531
           G   +FG P     +  +    +   + + W+  +   +  P+ KFPG   +S+ K+ G 
Sbjct: 109 GNHNSFGVPCTDEDKHLVTVDFLDAYAKETWETILHFMVGTPEAKFPGEGVLSLLKRGGL 168

Query: 532 TKYEREEFEKLRDAGRF 582
               + +    R   +F
Sbjct: 169 MSGPKNQLRITRAGFQF 185


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 208 PAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQA 89
           P P +S+ R  Q+LSA +  S+P   S  PS   GSL  +
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANS 510


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +1

Query: 115  DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 258
            ++ KKRA  DD    + +VS EYE L   SS+  ++     N  KY+ KN  K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 495 PRELELRTTQSLNDLCLP 442
           PRE+  + T S  DLCLP
Sbjct: 236 PREIWSKYTSSFGDLCLP 253


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 386 VPWGFPNAPRIPV 348
           + W FPNAP IPV
Sbjct: 46  IKWIFPNAPSIPV 58


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 256 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 360
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 423 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSA 325
           RH G+S  +++ C L +  +T    LE + S A
Sbjct: 94  RHGGVSLLNSKDCRLKYSSKTAKQYLEKLKSLA 126


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
 Frame = +1

Query: 283 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 450
           L P    R+     C        G     GK +G      AR+ IG+ +  +      K 
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158

Query: 451 QVIEALRRPKFKFPGSQKISVSK 519
               AL++  F  PG  +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 153 WEVIHCRSLFAQVENTDLWVRHTPT 79
           + ++H  +LFA  EN D ++   PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,798
Number of Sequences: 5004
Number of extensions: 54876
Number of successful extensions: 176
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)