Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_H06
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    26   2.4  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   5.6  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   5.6  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   7.3  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   9.7  

>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 304 ISIKKRLQRLLAFCCIKTHYYCMSTNLETPN 212
           +++K     +L F C K HY  ++ +L+ PN
Sbjct: 216 VTVKTPWLSVLPFNCKKNHYSVITLDLDVPN 246


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 120 QVNMNNITSLGRHIQRGSKSNEVINANMK 206
           QV +NNI+        GSK+NE+ N +M+
Sbjct: 84  QVGLNNISPAPVGYVPGSKTNELANNSME 112


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = -3

Query: 415 HFL*VFICTLHLIL-CGCHLTCSFYKECEXXXXXXXXTISIKKRLQRLLAFCCIKTHYYC 239
           HFL   I T+ L++ C C    S    C          + +   +   +  C  +   +C
Sbjct: 549 HFL---IITIGLVMFCKCFSEMSPLFACSTYSALAFILLQV---ISSYVTNCREEQGAFC 602

Query: 238 MSTNLETPNNHFMLALITSL 179
           +ST + TP+N     ++ +L
Sbjct: 603 VSTYISTPDNSLRTLIVLAL 622


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 117 PFQLIFVLILRIKNGRCSMTPKSLHRCLLYR 25
           P+ L  VL  R  +GRCS   +SL   +LY+
Sbjct: 46  PYHL-HVLDSRYADGRCSAAMRSLSNYVLYK 75


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 168 LFVCVDLMMLYCSYLLEPFQLIFVLILRIKNG 73
           L    + + L+ +  L PF  +F+ ILR +NG
Sbjct: 443 LLWATEAIPLFVTSFLVPFMTVFLKILRDENG 474


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 256 KTHYYCMSTNLETPNNHFMLALITSLDFDPLCMCR 152
           K  Y   S + E+P     L L  S+DFDP   C+
Sbjct: 708 KIFYLTQSESAESP-----LRLSVSIDFDPCSFCK 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,738,405
Number of Sequences: 5004
Number of extensions: 30743
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)